View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_low_3 (Length: 559)
Name: NF21217_low_3
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Original strand, 54219134 - 54219670
Alignment:
| Q |
16 |
atctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctgaaca |
115 |
Q |
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| T |
54219134 |
atctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctgaaca |
54219233 |
T |
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| Q |
116 |
agaaccaatatacaagtcaat----gtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatataccttg |
211 |
Q |
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| T |
54219234 |
agaaccaatatacaagtcaattaatgtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatataccttg |
54219333 |
T |
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| Q |
212 |
gaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataacaataccccaaattaaaatcatgtcaagttt |
311 |
Q |
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| T |
54219334 |
gaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataaaaataccccaaa-----atcatgtcaagttt |
54219428 |
T |
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| Q |
312 |
cgtcaaattgttgaatgaaggcaaaagatgaccacaatttcttggataagaaaaacgctggttaaggaaacaaaaatagattcattattgtgacatataa |
411 |
Q |
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| T |
54219429 |
cgtcaaattgttgaatgaaggcaaaagatgaccacaatttcttggataagaaaaacgctggttaaggaaacaaaaataaattcattattgtgacatataa |
54219528 |
T |
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| Q |
412 |
agaacatgcaatgaataaagaagcacataacggggagaacattgtcaatagtcattttcttatacaatat------------tnnnnnnnnngatgataa |
499 |
Q |
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| T |
54219529 |
agaacatgcaatgaataaagaagcacataacgggaagaacattgtcaatagtcattttcttatacaatatttaaaaaaaaaataaaaaaaaagatgataa |
54219628 |
T |
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| Q |
500 |
gtaaatattcaaacatacctcaatagtattatttgttagttt |
541 |
Q |
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| T |
54219629 |
gtaaatattcaaacatacctcaatagtattatttgttagttt |
54219670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 31217546 - 31217613
Alignment:
| Q |
28 |
acataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
95 |
Q |
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| T |
31217546 |
acatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 31217729 - 31217790
Alignment:
| Q |
213 |
aaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaacta |
274 |
Q |
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| T |
31217729 |
aaatgtgaagaaattctagtttaggactctttcggagaatgtctgctaatacttcacaacta |
31217790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 17595371 - 17595307
Alignment:
| Q |
10 |
aagaatatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
74 |
Q |
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| T |
17595371 |
aagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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