View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_low_7 (Length: 481)
Name: NF21217_low_7
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 22 - 481
Target Start/End: Complemental strand, 41129548 - 41129089
Alignment:
| Q |
22 |
aacatcctaatagcaagtggtgagccaggacatatacgtcttccactgccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaaccca |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129548 |
aacatcctaacagcaagtggtgagccaggacatatacgtcttccactgccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaaccca |
41129449 |
T |
|
| Q |
122 |
aaaatctttctggtgaaaacaaatgtgcatcatcccatatttctgttctaccaatagcccattcattgatcaaaacttgtgcaccttttggaattgtgta |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41129448 |
aaaatctttctggtgaaaacaaatgagcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttggaattgtgta |
41129349 |
T |
|
| Q |
222 |
acctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtatgga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129348 |
acctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtatgga |
41129249 |
T |
|
| Q |
322 |
agcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtactactt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129248 |
agcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtactactt |
41129149 |
T |
|
| Q |
422 |
cactcattgccctttctaatccatatgccgatgtttccgttcccgccacaagcaaatcct |
481 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129148 |
cactcattgccctttctaatccatatgccgatgtttccgttcccgccacaagcaaatcct |
41129089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 41108427 - 41107971
Alignment:
| Q |
19 |
tgcaacatcctaatagcaagtggtgagccaggacatatacgtcttccactgccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaac |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108427 |
tgcaacatcctaacagcaagtggtgagccaggacatatacgtcttccactaccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaac |
41108328 |
T |
|
| Q |
119 |
ccaaaaatctttctggtgaaaacaaatgtgcatcatcccatatttctgttctaccaatagcccattcattgatcaaaacttgtgcaccttttggaattgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41108327 |
ccaaaaatctttctggtgaaaacaaatgagcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttggaattgt |
41108228 |
T |
|
| Q |
219 |
gtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108227 |
gtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtat |
41108128 |
T |
|
| Q |
319 |
ggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtacta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108127 |
ggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtacta |
41108028 |
T |
|
| Q |
419 |
cttcactcattgccctttctaatccatatgccgatgtttccgttcccgccacaagca |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41108027 |
cttcactcattgccctttctaatccatatgccgatgtttccgttcccgccacaagca |
41107971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 41143132 - 41143594
Alignment:
| Q |
19 |
tgcaacatcctaatagcaagtggtgagccaggacatatacgtcttccactgccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaac |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41143132 |
tgcaacatcctaacagcaagtggtgagccaggacatatacgtcttccacttccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaac |
41143231 |
T |
|
| Q |
119 |
ccaaaaatctttctggtgaaaacaaatgtgcatcatcccatatttctgttctaccaatagcccattcattgatcaaaacttgtgcaccttttggaattgt |
218 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41143232 |
ccaaaaatctttctggtgaaaacaaatgagcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttggaattgt |
41143331 |
T |
|
| Q |
219 |
gtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41143332 |
gtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtat |
41143431 |
T |
|
| Q |
319 |
ggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtacta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41143432 |
ggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatggcgtacta |
41143531 |
T |
|
| Q |
419 |
cttcactcattgccctttctaatccatatgccgatgtttccgttcccgccacaagcaaatcct |
481 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143532 |
cttcgctcattgccctttctaatccatatgccgatgtttccgttcccgccacaagcaaatcct |
41143594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 22 - 481
Target Start/End: Original strand, 41118993 - 41119452
Alignment:
| Q |
22 |
aacatcctaatagcaagtggtgagccaggacatatacgtcttccactgccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaaccca |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41118993 |
aacatcctaacagcaagtggtgagccaggacatatacgtcttccactaccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaaccca |
41119092 |
T |
|
| Q |
122 |
aaaatctttctggtgaaaacaaatgtgcatcatcccatatttctgttctaccaatagcccattcattgatcaaaacttgtgcaccttttggaattgtgta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
41119093 |
aaaatctttctggtgaaaacaaatgtgcatcatcccatatgtctgttctaccaatagcccattcattgatcagaacttgtgcaccttttggaattgtgta |
41119192 |
T |
|
| Q |
222 |
acctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtatgga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41119193 |
acctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtatgga |
41119292 |
T |
|
| Q |
322 |
agcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtactactt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41119293 |
agcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatggcgtactactt |
41119392 |
T |
|
| Q |
422 |
cactcattgccctttctaatccatatgccgatgtttccgttcccgccacaagcaaatcct |
481 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||| || |||||||| ||||||||||||| |
|
|
| T |
41119393 |
cgctcattgccctttctaatccatatgctgttgtatctgttcccgctacaagcaaatcct |
41119452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 13789812 - 13789852
Alignment:
| Q |
172 |
ccaatagcccattcattgatcaaaacttgtgcaccttttgg |
212 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
13789812 |
ccaatagcccaaacattaatcaaaacttgtgcaccttttgg |
13789852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 41036021 - 41035591
Alignment:
| Q |
19 |
tgcaacatcctaatagcaagtggtgagccaggacatatacgtcttccactgccgaacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaac |
118 |
Q |
| |
|
|||| |||||||||||| | |||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||||| |||||||||||| | |
|
|
| T |
41036021 |
tgcatcatcctaatagccaatggtgaaccaggacatatacgtctcccactaccaaatggtgtaagattaaagtgtcgacctttgatatcaatttcagatc |
41035922 |
T |
|
| Q |
119 |
ccaaaaatctttctggtgaaaacaaatgtgcatcatcccatatttctgttctaccaatagcccattcattgatcaaaacttgtgcaccttttggaattgt |
218 |
Q |
| |
|
| |||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||||| ||| || ||||||||| |||||||| || |
|
|
| T |
41035921 |
ctaaaaatctttctggtgaaaataaatcagcatcatcccatatgtttgttctaccaatagcccattcatttatccgaatttgtgcaccctttggaatagt |
41035822 |
T |
|
| Q |
219 |
gtaacctgctatttccacatctacccttgctttcctaggaagtaacattggagctggagggtgtaaacgtaaactctcttttatcactgcattcaagtat |
318 |
Q |
| |
|
||| ||||||||| ||||||||| || ||||| | || || || | |||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
41035821 |
gtacactgctatttgcacatctactctagctttacgtgggagcaaaagtggagctggagggtgtaagcgtaaactctcttttatcactgcttgcaagtat |
41035722 |
T |
|
| Q |
319 |
ggaagcctatcaatatctgattcctcaattggtttgcctaatccaatggtttcctctaattccttctttgcttttgacataacctctggatgccgtacta |
418 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||||| | |||||||||||||| | |||||| || |||||| ||||| |||||||| ||| || |
|
|
| T |
41035721 |
ggaagcctatcaatgtctgattcttcaattagtttgcatgatccaatggtttccctcagttcctttttggcttttaacatagtctctggattgtgtatta |
41035622 |
T |
|
| Q |
419 |
cttcactcattgccctttctaatccatatgc |
449 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |
|
|
| T |
41035621 |
attcacccattgtcctttctaatccatatgc |
41035591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 18103946 - 18103899
Alignment:
| Q |
168 |
tctaccaatagcccattcattgatcaaaacttgtgcaccttttggaat |
215 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
18103946 |
tctaccaataacccatgcattgatcaaaacttgtgcatcttttggaat |
18103899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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