View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21217_low_8 (Length: 455)

Name: NF21217_low_8
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21217_low_8
NF21217_low_8
[»] chr3 (10 HSPs)
chr3 (117-437)||(3817918-3818242)
chr3 (117-437)||(47339626-47339948)
chr3 (117-176)||(32961441-32961500)
chr3 (117-173)||(36594226-36594282)
chr3 (17-52)||(6910430-6910465)
chr3 (17-52)||(20765292-20765327)
chr3 (17-52)||(28690341-28690376)
chr3 (117-176)||(33462900-33462959)
chr3 (117-176)||(43394364-43394423)
chr3 (117-171)||(1334108-1334162)
[»] chr1 (5 HSPs)
chr1 (117-170)||(23338001-23338054)
chr1 (117-176)||(26476823-26476882)
chr1 (117-176)||(31651715-31651774)
chr1 (117-170)||(48613901-48613954)
chr1 (117-169)||(44452391-44452443)
[»] chr8 (7 HSPs)
chr8 (117-176)||(27302057-27302116)
chr8 (117-178)||(44871526-44871587)
chr8 (117-176)||(8496693-8496752)
chr8 (117-176)||(44947200-44947259)
chr8 (117-176)||(44887522-44887581)
chr8 (117-170)||(17523998-17524051)
chr8 (117-170)||(44040020-44040073)
[»] chr4 (5 HSPs)
chr4 (117-176)||(1981190-1981249)
chr4 (117-176)||(29821245-29821304)
chr4 (117-176)||(37164212-37164271)
chr4 (17-52)||(17446764-17446799)
chr4 (117-170)||(54802873-54802926)
[»] scaffold0283 (1 HSPs)
scaffold0283 (117-176)||(3178-3237)
[»] chr7 (6 HSPs)
chr7 (117-176)||(5842313-5842372)
chr7 (117-176)||(18756784-18756842)
chr7 (117-176)||(37099686-37099745)
chr7 (118-160)||(31496473-31496515)
chr7 (18-52)||(46480016-46480050)
chr7 (118-171)||(9173151-9173204)
[»] scaffold0500 (1 HSPs)
scaffold0500 (117-175)||(488-546)
[»] chr6 (2 HSPs)
chr6 (117-178)||(10106006-10106067)
chr6 (17-52)||(1040920-1040955)
[»] scaffold0018 (1 HSPs)
scaffold0018 (17-52)||(67900-67935)
[»] chr5 (6 HSPs)
chr5 (17-52)||(8086161-8086196)
chr5 (117-172)||(39104093-39104148)
chr5 (17-51)||(11761162-11761196)
chr5 (17-51)||(33587601-33587635)
chr5 (117-178)||(30788400-30788461)
chr5 (118-166)||(1918650-1918698)
[»] chr2 (3 HSPs)
chr2 (117-176)||(2831903-2831962)
chr2 (117-176)||(15177564-15177623)
chr2 (117-171)||(8896466-8896520)
[»] scaffold0289 (1 HSPs)
scaffold0289 (136-176)||(9337-9377)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 117 - 437
Target Start/End: Original strand, 3817918 - 3818242
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatc----atgtattatggaacggatgtactacctcatatcttgagttacacacaaccatc 212  Q
    |||||||||||||||||||||||||||||||||||||||| ||    ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||    
T  3817918 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtgtctgtcatgtattgtgggaaggaggtactacctcatatcttgagttacacacaaccatc 3818017  T
Q  213 atcgaaacattatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcattcgtact 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3818018 atcaaaacattatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcatacgtact 3818117  T
Q  313 caaagctgcaactacacacgactcgtgtgacacaagacctaaaccagcttatttaaccaaatcagtttacaagttcttaagaacataataatttgttgta 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  3818118 caaagctgcaactacacacgactcgtgtgacacaagacctaaaccagcttatttaaccaaatcagtttacaggttcttaagaacataataatttgttgtc 3818217  T
Q  413 aaaaataataatcataatagacatt 437  Q
    |||||||||||||| ||||||||||    
T  3818218 aaaaataataatcaaaatagacatt 3818242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 117 - 437
Target Start/End: Complemental strand, 47339948 - 47339626
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatc----atgtattatggaacggatgtactacctcatatcttgagttacacacaaccatc 212  Q
    |||||||||||||||||||||||||||||||||||||||| ||    ||||||| ||| ||| | ||||||||||||  |||||||||||||| ||||||    
T  47339948 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtgtctgtcatgtattgtgggacgaaggtactacctcat--cttgagttacacaccaccatc 47339851  T
Q  213 atcgaaacattatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcattcgtact 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  47339850 atcaaaacattatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcgtacgtact 47339751  T
Q  313 caaagctgcaactacacacgactcgtgtgacacaagacctaaaccagcttatttaaccaaatcagtttacaagttcttaagaacataataatttgttgta 412  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  47339750 caaagctgcaactacacacgactcgtgtgacacaaaacctaaaccagcttatctaaccaaatcagtttacaagttcttaagaacataataatttgttgtc 47339651  T
Q  413 aaaaataataatcataatagacatt 437  Q
    ||||||| ||| |||||||||||||    
T  47339650 aaaaatattaaccataatagacatt 47339626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 32961441 - 32961500
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||| ||||||||| | ||||||||||||| | |||||||| |||||    
T  32961441 ctcaaaattatgcattgacatgcgtaatagggtcaactgtatcgtatattatgggacgga 32961500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 36594282 - 36594226
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaac 173  Q
    ||||||||||||||||| ||||||||| | |||||||||| ||| |||||| |||||    
T  36594282 ctcaaaattatgcattgacatgcgtaataaggtcaactgtgtcaagtattaaggaac 36594226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 6910430 - 6910465
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  6910430 aatattaacatgtaagatgttgtttgatttgtctcg 6910465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 20765292 - 20765327
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  20765292 aatattaacatgtaagatgttgtttgatttgtctcg 20765327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 28690341 - 28690376
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  28690341 aatattaacatgtaagatgttgtttgatttgtctcg 28690376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 33462900 - 33462959
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||| ||||| ||| | ||||||||||  |||||||||||| |||||    
T  33462900 ctcaaaattatgcattggcatgcataatagggtcaactgtggcatgtattatgggacgga 33462959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 43394423 - 43394364
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||| ||||| ||||||| | | |||| ||||| |||||||||||||||||||    
T  43394423 ctcaaaattatccattggcatgcgtgatagggtccactgtgtcatgtattatggaacgga 43394364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 1334162 - 1334108
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgga 171  Q
    ||||||||||||||||| |||| |||| | ||||||||||||||  |||||||||    
T  1334162 ctcaaaattatgcattgacatgtgtaataaggtcaactgtatcaaatattatgga 1334108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 23338001 - 23338054
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgg 170  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  23338001 ctcaaaattatgcattgacatgcgtaatatggtcaactgtatcatgtattatgg 23338054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 26476882 - 26476823
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||| |||| ||||||||| | |||||||||| ||| |||||| ||||||||    
T  26476882 ctcaaaattatgtattgacatgcgtaataaggtcaactgtgtcaagtattaaggaacgga 26476823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 31651774 - 31651715
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| |||| |||||||| |||||    
T  31651774 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacgga 31651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 48613954 - 48613901
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgg 170  Q
    ||||||||||| ||||| ||||||||| | ||| |||||||||| |||||||||    
T  48613954 ctcaaaattatacattgacatgcgtaataaggttaactgtatcaagtattatgg 48613901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 44452391 - 44452443
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatg 169  Q
    ||||||||||||||||  ||||||||| | |||||| ||| ||||||||||||    
T  44452391 ctcaaaattatgcattaacatgcgtaataaggtcaattgtgtcatgtattatg 44452443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 27302057 - 27302116
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||    
T  27302057 ctcaaaattatgcattgacatgcgtaatagggtcaattgtatcatgtattatgggacgga 27302116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 44871526 - 44871587
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacggatg 178  Q
    ||||||||||||||||| ||||  ||| | ||||||||| ||||||||||||||||||||||    
T  44871526 ctcaaaattatgcattgacatgtataatagggtcaactgcatcatgtattatggaacggatg 44871587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 8496752 - 8496693
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  || ||||| | |||||||||||||||||||||||| |||||    
T  8496752 ctcaaaattatgcattgatatacgtaatagggtcaactgtatcatgtattatgggacgga 8496693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 44947200 - 44947259
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| ||||||||||||| |||||    
T  44947200 ctcaaaattatgcattggtatgcgtaatatggtcaactgtgtcatgtattatgggacgga 44947259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 44887581 - 44887522
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| |||| |||||||| |||||    
T  44887581 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacgga 44887522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 17523998 - 17524051
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgg 170  Q
    ||||||||||||||||| ||||||||| | | |||| ||| |||||||||||||    
T  17523998 ctcaaaattatgcattgacatgcgtaataagatcaattgtgtcatgtattatgg 17524051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 44040020 - 44040073
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgg 170  Q
    |||||||||||||||||  |||||||| | |||||||||| |||| ||||||||    
T  44040020 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgg 44040073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 1981249 - 1981190
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||    
T  1981249 ctcaaaattatgcattgacatgcgtaagagggtcaactttatcatgtattatgggacgga 1981190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 29821245 - 29821304
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| ||||||||||||| |||||    
T  29821245 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatgtattatgggacgga 29821304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 37164212 - 37164271
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| ||||||||||||| |||||    
T  37164212 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatgtattatgggacgga 37164271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 17446799 - 17446764
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  17446799 aatattaacatgtaagatgttgtttgatttgtctcg 17446764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 54802926 - 54802873
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgg 170  Q
    ||||||||||||||||  ||||||||| | |||||||| ||||| |||||||||    
T  54802926 ctcaaaattatgcattaacatgcgtaataaggtcaactctatcaagtattatgg 54802873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 3178 - 3237
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| ||||||||||||| |||||    
T  3178 ctcaaaattatgcattggtatgcgtaatatggtcaactgtgtcatgtattatgggacgga 3237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 5842313 - 5842372
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||| ||| ||||| | |||||||||| ||||||||||||| |||||    
T  5842313 ctcaaaattatgcattgacattcgtaatatggtcaactgtgtcatgtattatgggacgga 5842372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 18756784 - 18756842
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||||  |||||||| | |||||||||| ||||||||||||| |||||    
T  18756784 ctcaaaattatgcattgatatgcgtaata-ggtcaactgtgtcatgtattatgggacgga 18756842  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 37099745 - 37099686
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||| ||||||||| | | |||||||| ||| ||||||||| |||||    
T  37099745 ctcaaaattatgcattgacatgcgtaataagatcaactgtgtcaagtattatgggacgga 37099686  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 31496515 - 31496473
Alignment:
Q  118 tcaaaattatgcattgtcatgcgtaacacggtcaactgtatca 160  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    
T  31496515 tcaaaattatgcattgacatgcgtaataaggtcaactgtatca 31496473  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 46480016 - 46480050
Alignment:
Q  18 atattaacatgtaggatgttgtttgatttgtctcg 52  Q
    ||||||||||||| |||||||||||||||||||||    
T  46480016 atattaacatgtaagatgttgtttgatttgtctcg 46480050  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 9173204 - 9173151
Alignment:
Q  118 tcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgga 171  Q
    |||||||||||||||| ||||||||| | |||||||||| || |||||| ||||    
T  9173204 tcaaaattatgcattgacatgcgtaatagggtcaactgtgtcttgtattgtgga 9173151  T

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Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 546 - 488
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgg 175  Q
    ||||||||||||||||| ||| ||||| | |||||||||| ||||||||||||| ||||    
T  546 ctcaaaattatgcattgacatacgtaatagggtcaactgtgtcatgtattatgggacgg 488  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 10106006 - 10106067
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacggatg 178  Q
    |||||||||||||||||  || ||||| | |||||||||| ||||||||||||| |||||||    
T  10106006 ctcaaaattatgcattgatatacgtaatatggtcaactgtgtcatgtattatgggacggatg 10106067  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 1040920 - 1040955
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  1040920 aatattaacatgtaagatgttgtttgatttgtctcg 1040955  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 67935 - 67900
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  67935 aatattaacatgtaagatgttgtttgatttgtctcg 67900  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 8086196 - 8086161
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctcg 52  Q
    |||||||||||||| |||||||||||||||||||||    
T  8086196 aatattaacatgtaagatgttgtttgatttgtctcg 8086161  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 39104148 - 39104093
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaa 172  Q
    ||||||||||||||||| ||||||||| | |||||||| |||||  ||||||||||    
T  39104148 ctcaaaattatgcattggcatgcgtaataaggtcaactatatcaaatattatggaa 39104093  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 11761162 - 11761196
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctc 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  11761162 aatattaacatgtaagatgttgtttgatttgtctc 11761196  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 33587635 - 33587601
Alignment:
Q  17 aatattaacatgtaggatgttgtttgatttgtctc 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  33587635 aatattaacatgtaagatgttgtttgatttgtctc 33587601  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 30788400 - 30788461
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacggatg 178  Q
    ||||||||||||||||| ||||||| | | |||||||||| ||| |||||||| ||| ||||    
T  30788400 ctcaaaattatgcattgacatgcgttataaggtcaactgtttcaagtattatgaaacagatg 30788461  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 1918698 - 1918650
Alignment:
Q  118 tcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtatt 166  Q
    |||||||||||||||| |||| |||| | ||||||||||||| ||||||    
T  1918698 tcaaaattatgcattggcatgtgtaataaggtcaactgtatcctgtatt 1918650  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 2831903 - 2831962
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    ||||||||||||||||  ||||||||| | |||||||||| ||| ||||||||| |||||    
T  2831903 ctcaaaattatgcattaacatgcgtaataaggtcaactgtgtcaagtattatgggacgga 2831962  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 15177564 - 15177623
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||||||||||| ||||| |||| | ||||| |||| ||||||||||||| |||||    
T  15177564 ctcaaaattatgcattttcatgtgtaatatggtcatctgtgtcatgtattatgggacgga 15177623  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 8896466 - 8896520
Alignment:
Q  117 ctcaaaattatgcattgtcatgcgtaacacggtcaactgtatcatgtattatgga 171  Q
    ||||||||||||||||| |||| |||| | |||||||||| | ||||||||||||    
T  8896466 ctcaaaattatgcattgacatgtgtaatagggtcaactgtgtgatgtattatgga 8896520  T

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Target: scaffold0289 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 9337 - 9377
Alignment:
Q  136 atgcgtaacacggtcaactgtatcatgtattatggaacgga 176  Q
    |||||||| | |||||||||||||| |||||||||||||||    
T  9337 atgcgtaataaggtcaactgtatcaagtattatggaacgga 9377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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