View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21217_low_9 (Length: 452)
Name: NF21217_low_9
Description: NF21217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21217_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 35107782 - 35107930
Alignment:
| Q |
17 |
atgaagaacatgtgaagaagagtcaataggtggtactcttagcctttcccattttatgttttcctcagttgtccatctcccatgaggtgagtacctgtca |
116 |
Q |
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| T |
35107782 |
atgaagaacatgtgaagaagagtcaataggtggtactcttagcctttcccattttatgttttcctcagttgtccatctcccatgaggtgagtacctgtca |
35107881 |
T |
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| Q |
117 |
gagaaaacatgaacttcatgtttagagtttaatgaccttatctaccttt |
165 |
Q |
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| T |
35107882 |
gagaaaacatgaacttcatatttagagtttaatgaccttatctaccttt |
35107930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 214 - 436
Target Start/End: Original strand, 35107975 - 35108171
Alignment:
| Q |
214 |
gcatttcggtgtctgacaccggcacatgtcactaacacaaggggttcattcaattattttcattttcttaaattattattagtgtttacatgttagttac |
313 |
Q |
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| T |
35107975 |
gcatttcagtgtctgacaccggcacatgccactaacacaaggggttcattcaattattttcattttcttaaattattattagtg-ttaca---------- |
35108063 |
T |
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| Q |
314 |
aatgtcgtgtccggttcagaattaaaccaaaaggacaataggacagttaaaaagacaagttggttggcacctaaacttaacaatattgaaggagtcaact |
413 |
Q |
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| T |
35108064 |
-------tgtccggttcagaattaaaccaaa--------aggacagttaaaaagacaagttggttggcacctaaactcaacaatattgaaggagtcaact |
35108148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 30585121 - 30585168
Alignment:
| Q |
260 |
cattcaattattttcattttcttaaattattattagtgtttacatgtt |
307 |
Q |
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| T |
30585121 |
cattcaatcactttcattttcttaaattattattagtgtctacatgtt |
30585168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 16331020 - 16330974
Alignment:
| Q |
260 |
cattcaattattttcattttcttaaattattattagtgtttacatgt |
306 |
Q |
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| T |
16331020 |
catttaatcattttcattttcttaaattattactagtgtctacatgt |
16330974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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