View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21218_high_2 (Length: 250)
Name: NF21218_high_2
Description: NF21218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21218_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 9867047 - 9867153
Alignment:
| Q |
143 |
tatcaacttggttttgaaatgattgaatggttaaactaaggagttttcatatagccaatgaaacatcgtaaacaaaagcttataacctaattaaataaaa |
242 |
Q |
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| T |
9867047 |
tatcaacttggttttgaaatgattgaatggttaaactaaggagttttcatatagccaatgaaacatcgtaaacaaaagcttataacctaattaaataaaa |
9867146 |
T |
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| Q |
243 |
taataat |
249 |
Q |
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| T |
9867147 |
taataat |
9867153 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 9866918 - 9866982
Alignment:
| Q |
15 |
tataaaagccactataagaatgcaaggaaaacaacggcaaaacattgatccttccccatcccccc |
79 |
Q |
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| T |
9866918 |
tataaaagccactataagaatgcaaggaaaacaacggcaaaacattgatccttccccatcccccc |
9866982 |
T |
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