View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21219_high_1 (Length: 682)
Name: NF21219_high_1
Description: NF21219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21219_high_1 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 14291 - 14948
Alignment:
| Q |
18 |
atcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14291 |
atcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattg |
14390 |
T |
|
| Q |
118 |
gagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctgaggtcaaacaaatgattgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14391 |
gagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctgaggtcaagcaaatgattgaa |
14490 |
T |
|
| Q |
218 |
aaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaa |
317 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14491 |
aaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaa |
14590 |
T |
|
| Q |
318 |
gttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14591 |
gttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttt |
14690 |
T |
|
| Q |
418 |
tatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14691 |
tatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctc |
14790 |
T |
|
| Q |
518 |
aatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14791 |
aatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatg |
14890 |
T |
|
| Q |
618 |
atcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14891 |
atcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
14948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Complemental strand, 3631794 - 3631137
Alignment:
| Q |
18 |
atcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3631794 |
atcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattg |
3631695 |
T |
|
| Q |
118 |
gagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctgaggtcaaacaaatgattgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
3631694 |
gagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctgaggtcaagcaaatgattgaa |
3631595 |
T |
|
| Q |
218 |
aaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaa |
317 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3631594 |
aaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaa |
3631495 |
T |
|
| Q |
318 |
gttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631494 |
gttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttt |
3631395 |
T |
|
| Q |
418 |
tatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631394 |
tatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctc |
3631295 |
T |
|
| Q |
518 |
aatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631294 |
aatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatg |
3631195 |
T |
|
| Q |
618 |
atcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3631194 |
atcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
3631137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Complemental strand, 3621397 - 3620767
Alignment:
| Q |
18 |
atcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtcatacaatggcatggatatgatattttcaccatacaatgatcattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||| ||||| || ||||||||||||||||||||||||||| ||| |
|
|
| T |
3621397 |
atcatgatcatgatgtatctagtagacctccatcacatggtccaaaaacattgtcatataatggtatagatatgatattttcaccatacaatgattgttg |
3621298 |
T |
|
| Q |
118 |
gagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctgaggtcaaacaaatgattgaa |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
3621297 |
gagagagataagaaaaatttgtgttgtccatttctttagctccaaaaaaatttctagctttgctcatgtgagaaaatctgaggtcaagctaatgattgaa |
3621198 |
T |
|
| Q |
218 |
aaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaattgcttttggaaaaa |
317 |
Q |
| |
|
|| ||||||| ||||||| ||| | |||| ||||||||||||||| || |||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
3621197 |
aagatatctaaccatgtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaattgcttttggaaaaa |
3621098 |
T |
|
| Q |
318 |
gttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
3621097 |
gttatgagcatgaagggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcagattatattccttt |
3620998 |
T |
|
| Q |
418 |
tatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctc |
517 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
3620997 |
tatggggtgggttgataaactcacaggggcaattgctcgtgttgacaacactttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctc |
3620898 |
T |
|
| Q |
518 |
aatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatg |
617 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3620897 |
aatcctaataataggaaaaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaata |
3620798 |
T |
|
| Q |
618 |
atcacatcaaatccgtccttatggtatgttc |
648 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |
|
|
| T |
3620797 |
atcacatcaaagccgtcgttatggtatgttc |
3620767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 9401208 - 9401162
Alignment:
| Q |
392 |
ttctttgtttcagatcatattccttttatggggtggattgataaact |
438 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
9401208 |
ttctttgtttctgattatattccatttatgggttggattgataaact |
9401162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 9027370 - 9027422
Alignment:
| Q |
92 |
atattttcaccatacaatgatcattggagagagataagaaaaatttgtattgt |
144 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
9027370 |
atattttcacaatacactgatttttggagagaaataagaaaaatttgtgttgt |
9027422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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