View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21219_high_2 (Length: 329)
Name: NF21219_high_2
Description: NF21219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21219_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 29559051 - 29558748
Alignment:
| Q |
10 |
attattctatccaacaagacatcttttataaaggacaaaatcgtaaggatttatacaagacccaatggagacagtagcttcgctcataaatgtagtgctt |
109 |
Q |
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| T |
29559051 |
attattctatccatcaagacatcatttataaagggcaaaatcgtaaggatttacacaagacccaaaggagacagtagtttggctcataaatgtagtgttg |
29558952 |
T |
|
| Q |
110 |
caagcttgaagtcggcaaatggtctaccaagtagaagtcaaatatatttcatacgcttcatagcttacaaacactctagtcccttaaattcgatcagtag |
209 |
Q |
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| T |
29558951 |
cgagcttgaggtcggaaaatggtctaccaagtagaagtcaaacatatttcatacgcttcatagcttacaaacactctagtcccttagattcgatcagtag |
29558852 |
T |
|
| Q |
210 |
ttattgttccgctagaccaaaactttaagtctcatattgtttaaaaattaaatgtaaatatagtttataaacaacattcacactcctctaacatagctca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29558851 |
ttattgttccgctagaccaaaactttaagtctcatattgtttaaaaattaaatgtaaatatagtttataaacaacattcacactcctctaacatagctca |
29558752 |
T |
|
| Q |
310 |
tttt |
313 |
Q |
| |
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|||| |
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| T |
29558751 |
tttt |
29558748 |
T |
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