View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21219_high_3 (Length: 326)
Name: NF21219_high_3
Description: NF21219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21219_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 155 - 308
Target Start/End: Complemental strand, 3572594 - 3572441
Alignment:
| Q |
155 |
atagcaagatcaattaaatttaagaggtaaagatgaaagaataaccttaaacttgatttgctcttcgtaaagactccaatgtatagtgtggatatgacga |
254 |
Q |
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| T |
3572594 |
atagcaagatcaattaaatttaagaggtaaagacgaaagaataaccttaaacttgatttgctcttcgtaaagactccaatgtatagtgtggatatgacga |
3572495 |
T |
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| Q |
255 |
aagaaatctcttaatttgcagcacaaaattcacgagatgtatatactccctttt |
308 |
Q |
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| T |
3572494 |
aagaaatctcttaatttgcagcacaaaattcacgagatgtatatactccctttt |
3572441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 3572707 - 3572611
Alignment:
| Q |
17 |
ttagaaattagattgagtttaactcaactttacatactcgacttttaagatgagaattgatccacatacaaacacaaattcagggcatagacccgta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3572707 |
ttagaaattagattgagtttaactcaactttacatactcgacttttaagatgagaattgatccacatacaaacacaaattcagggcatagactcgta |
3572611 |
T |
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