View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21219_low_2 (Length: 379)
Name: NF21219_low_2
Description: NF21219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21219_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 47242781 - 47242432
Alignment:
| Q |
18 |
accaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaatgtagtattcttttatctggtcttgaatcaaattttgttct |
117 |
Q |
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| T |
47242781 |
accaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaatgtagtattcttttatctggtcttgaatcaaattttgttct |
47242682 |
T |
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| Q |
118 |
tgattgaattattttatttcannnnnnnnctttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatggaagctgac |
217 |
Q |
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| T |
47242681 |
tgattgaataattttatttcatttttt---tttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatggaagctgac |
47242585 |
T |
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| Q |
218 |
atactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatatctaaagccttgt |
317 |
Q |
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| T |
47242584 |
atactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatatctaaagccttgt |
47242485 |
T |
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| Q |
318 |
tgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattcat |
370 |
Q |
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| T |
47242484 |
tgaaatgaagttaattggactaattctgtttattttcacttgctgtgattcat |
47242432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 355
Target Start/End: Complemental strand, 47249041 - 47248893
Alignment:
| Q |
206 |
atggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatat |
305 |
Q |
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| T |
47249041 |
atggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacatttattactgtaaagttgaatat |
47248942 |
T |
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| Q |
306 |
ctaaagccttgttgaaatgaagttaattggactaattatgtttatttgca |
355 |
Q |
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| T |
47248941 |
ataaatccttgctgaaatgaa-ataattggactgaccatgtttatgtgca |
47248893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 369
Target Start/End: Complemental strand, 47253871 - 47253696
Alignment:
| Q |
194 |
taggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgt |
293 |
Q |
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| T |
47253871 |
taggttattaagatggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgt |
47253772 |
T |
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| Q |
294 |
aaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattca |
369 |
Q |
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| T |
47253771 |
taatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttca |
47253696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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