View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21219_low_5 (Length: 250)
Name: NF21219_low_5
Description: NF21219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21219_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 42677020 - 42677259
Alignment:
| Q |
11 |
agaatatcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattttttccatttgagcatggtgctgattt |
110 |
Q |
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| T |
42677020 |
agaaaatcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattctatccatttgagcatggtgctgattt |
42677119 |
T |
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| Q |
111 |
tttgtcgttggaagctggtcctagccgcaaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatg |
210 |
Q |
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| T |
42677120 |
tttgtcgttggaagctggtcctagtcgcaaaccattggagaatacttcccatgttttgtatattggtttgattccacatggcttctaagagatggagatg |
42677219 |
T |
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| Q |
211 |
gcggaagcttattttggacaatttggaaccatcaagagat |
250 |
Q |
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| T |
42677220 |
gcgaaagcttattttggacaatttggaaccatcaagagat |
42677259 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 48969784 - 48969712
Alignment:
| Q |
139 |
aaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatgg |
211 |
Q |
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| T |
48969784 |
aaacaattggagaattcttcccctgttttgtatattggtcggattccacatggcttctatgagaaggagatgg |
48969712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 48969581 - 48969547
Alignment:
| Q |
216 |
agcttattttggacaatttggaaccatcaagagat |
250 |
Q |
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| T |
48969581 |
agcttattttggacaatttggaaccatcaagagat |
48969547 |
T |
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