View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2121_high_3 (Length: 303)
Name: NF2121_high_3
Description: NF2121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2121_high_3 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 75 - 295
Target Start/End: Complemental strand, 24894980 - 24894759
Alignment:
| Q |
75 |
ctcaattcaaccctagaaacaagaatttttt-cttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgcgaacttgagatcttaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24894980 |
ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtatgaagttgaaccaacccacagaaattgacacgcgaacttgagatcttaa |
24894881 |
T |
|
| Q |
174 |
ataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
273 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24894880 |
ataaagttaagaaaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
24894781 |
T |
|
| Q |
274 |
tcatacaacgttgcttcatctc |
295 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
24894780 |
tcatacaacgttgcttcttctc |
24894759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 75 - 286
Target Start/End: Original strand, 25326551 - 25326763
Alignment:
| Q |
75 |
ctcaattcaaccctagaaacaagaattttttcttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgc-gaacttgagatcttaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
25326551 |
ctcaattcaaccctagaaacaagaattttttcttacattgtttttttttaagaagttgaaccaacccaccaaaattgacacattgaacttgtgatcttaa |
25326650 |
T |
|
| Q |
174 |
ataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
273 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326651 |
ataaagttaagagaagcaaaccaccataattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
25326750 |
T |
|
| Q |
274 |
tcatacaacgttg |
286 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25326751 |
tcatacaacgttg |
25326763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 75 - 282
Target Start/End: Original strand, 25628809 - 25629018
Alignment:
| Q |
75 |
ctcaattcaaccctagaaacaagaatttttt-cttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgcga-acttgagatctta |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
25628809 |
ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtaagaagttgaactaacccactgaaattgacacattatacttgagatctta |
25628908 |
T |
|
| Q |
173 |
aataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatctt |
272 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25628909 |
aataaagttcagagaagcacaccattagaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatctt |
25629008 |
T |
|
| Q |
273 |
ctcatacaac |
282 |
Q |
| |
|
|||||||||| |
|
|
| T |
25629009 |
ctcatacaac |
25629018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 289
Target Start/End: Complemental strand, 31301 - 31086
Alignment:
| Q |
75 |
ctcaattcaaccctagaaacaagaattttttcttagattgnnnnnnngtatgaagttgaaccaacccacagaaattgacacgcg-aacttgagatcttaa |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
31301 |
ctcaattcaaccatagaaacaagaattttttcttagattgtttttttttaagaagttgaaccaaccaaccgaaattgacacattcaacttgagatcttaa |
31202 |
T |
|
| Q |
174 |
ataaagttaagagaagcacaccaccaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201 |
ataaagttaagagaagcacaccaccaaacttataaagttgtatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
31102 |
T |
|
| Q |
274 |
tcatacaacgttgctt |
289 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31101 |
tcatacaacgttgctt |
31086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University