View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2121_high_4 (Length: 292)
Name: NF2121_high_4
Description: NF2121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2121_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 27717089 - 27717373
Alignment:
| Q |
1 |
gcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgcttagcaaaaataaggggaggatgacgtaattttctccatagtttatggt |
100 |
Q |
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| T |
27717089 |
gcaaaaggggtttcacaagtgaattatctaagaaataagggaggtttgtgcttagcaaaaataaggggaggatgacgtaattttcgccatagtttatggt |
27717188 |
T |
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| Q |
101 |
tttatttttaaaattgatatttgattgttttaagaaatgagagggacgattcattacatattttacaaatgatttgaagtatgaaaaacaatatcacgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27717189 |
tttatttttaaaattgatatttgattgttttaagaaatgagagggacgattcattacatattttacaaatgatttgaagtatgaaaaacaatttcacgaa |
27717288 |
T |
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| Q |
201 |
ttggaacaaaattcatttacagcgcattatctatatgttctctctaatgaaatacttcgctcaagggtaatcttgtttcatctca |
285 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27717289 |
ttggaacaaaattcatttacagcgcattatctatctgttatctctaatgaaatacttcgctcaagggtaatcttgtttcatctca |
27717373 |
T |
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