View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2121_high_5 (Length: 250)
Name: NF2121_high_5
Description: NF2121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2121_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33789401 - 33789650
Alignment:
| Q |
1 |
tgtggagtgatagggagttcttcttgcatctcctttggctctt---gaatcttttttcctcttcttacatatttgtaaacttttgtagaagctgttttgg |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33789401 |
tgtggagtgatagggagttcttcttgcatctcctttggctcttcttgaatcttttttcctcttcttacatatttgtaaacttttgtaaaagctgttttgg |
33789500 |
T |
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| Q |
98 |
ccttttttgcatcggattttgaagaggattgagagttcttccnnnnnnnagttaccaatgaagttgaaggaacattttcagctgacttaacacttgttcc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33789501 |
ccttttttgcatcggattttgaagaggattgagagttcttccttattttagttaccaatgaagttgaaggaacattttcagctgacttaacacttgttcc |
33789600 |
T |
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| Q |
198 |
ttcagaggggtgaagtttatccctcaatactatccaagaataatctaccc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33789601 |
ttcagaggggtgaagtttatccctcaatactatccaagaattatctaccc |
33789650 |
T |
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