View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21220_high_14 (Length: 251)
Name: NF21220_high_14
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 33868196 - 33868415
Alignment:
| Q |
17 |
cttccctcctttttcctccgaactctccaacatagcctaaacggtcatggccataataaactatgcatatatctcactattattgctgaaaaactaacta |
116 |
Q |
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| T |
33868196 |
cttccctcctttttcctccgaactctccaacatagcctaaacggtcatggccataataaactatgcatatatctcactattattgctgaaaaactaacta |
33868295 |
T |
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| Q |
117 |
aaggaaatatatctttgacatcacagttcatcaacatgtccacccaaccccggtggcattggaaagttagatatcccttttatatgctcagccccaatta |
216 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33868296 |
aaggaaaaatatttttgacatcacagttcatcaacatgtccacccaaccccagtggcattggaaagttagatatcccttttatatgctcggccccaatta |
33868395 |
T |
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| Q |
217 |
aggtaaatgcatctccatcc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
33868396 |
aggtaaatgcatctccatcc |
33868415 |
T |
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