View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21220_high_9 (Length: 306)
Name: NF21220_high_9
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 130651 - 130912
Alignment:
| Q |
16 |
atattaaggatttgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaacaattgtgataaagaa |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130651 |
atattaaggattcgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaacaattgtgataaagaa |
130750 |
T |
|
| Q |
116 |
aatgaaagaccaataaaggagagttcattttttaatatattgaaaaaagtgttgatgattgaagggaacatgtgatcccctttgaagaagggttgagggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
130751 |
aatgaaagaccaataaaggagagttcattttttaatatattgaaaatagtgttgatgattgaagggaacatgtgatcccctttgaaga-------agggt |
130843 |
T |
|
| Q |
216 |
tgaacaaggtatgaacattgatgattgtaggatcatgaatgttttgattgtagtgatggtagggaggag |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
130844 |
tgaacaaggtatgaacattgatgattgtaggatcatgaatgttttgattatagtgatggtagggaggag |
130912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 22220617 - 22220683
Alignment:
| Q |
218 |
aacaaggtatgaacattgatgattgtaggatcatgaatgttttgattgtagtgatggtagggaggag |
284 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||| |||||||||| |||| |||||||| |
|
|
| T |
22220617 |
aacaatgtatgaacattgatgattgtaggatcataaaggttgtgattgtagtagtggttgggaggag |
22220683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University