View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21220_low_18 (Length: 248)
Name: NF21220_low_18
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_low_18 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0457 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8986 - 9093
Alignment:
| Q |
1 |
ctataccacaggagaagcttcagcccataacaaggaattgtccaaaagagtatccgctatcaaatcccacttgtcccaaaggttaggaagatggggtggt |
100 |
Q |
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| T |
8986 |
ctataccacaggagaagcttcagcccctaacaaggaattgtccaaaagagtatccgcaatcaaatcccacttgtcccaaaggttaggaagatggggtggt |
9085 |
T |
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| Q |
101 |
ctgttatt |
108 |
Q |
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| T |
9086 |
ctattatt |
9093 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 17225873 - 17225770
Alignment:
| Q |
108 |
tatgaatcttgtgccaaaaccaagcaggagctgaagcaaaaggaaccataggttcagctnnnnnnnngaaaatcgggcttatgtgtctttatcatttgta |
207 |
Q |
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| T |
17225873 |
tatgaatcttgtgccaaaaccaatcaggaacagaaacataaggaaccattggttcagct-aaaaagagaaaatcaggcttatgtgtttctatcatttgta |
17225775 |
T |
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| Q |
208 |
tgaga |
212 |
Q |
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||||| |
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| T |
17225774 |
tgaga |
17225770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 17225923 - 17225891
Alignment:
| Q |
76 |
ccaaaggttaggaagatggggtggtctgttatt |
108 |
Q |
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| T |
17225923 |
ccaaaggttaggaagatggggtggtctattatt |
17225891 |
T |
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