View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21220_low_2 (Length: 587)
Name: NF21220_low_2
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 36604510 - 36603932
Alignment:
| Q |
1 |
acacattgtaaacaccttgggtaattaagaatcattcgaggaaggattcaatgtttttctattgaatcgtagagtgataatatttggacttgcacttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36604510 |
acacattgtaaacaccttgggtaattaagaatcattcgaggaaggattcaatgtttttctattgaatcgtagagtgataatatttggaattgcacttgca |
36604411 |
T |
|
| Q |
101 |
cataggttctagatttgttctcggttgaatannnnnnn-gctagatcatttagtttgcttgctgttggtatttgttccactcttcttgttgaatcattaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36604410 |
cataggttctagatttgttctcggttgaatattttttttgctagatcatttagtttgcttgctgttggtatttgttccactcttcttgttgaatcattaa |
36604311 |
T |
|
| Q |
200 |
caaaaataaattttgacattttcaactgtgcatctaaacacatgctaaatctgttgttggtttgattgtaggttcttggtttggagaaaacggcctctca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36604310 |
caaaaataaattttgacattttcaactgtgcatttaaacacatgctaaatctgttgttggtttgattgtaggttcttggtttggagaaaacggcctctca |
36604211 |
T |
|
| Q |
300 |
acaagaaataaagaaggcctattacaaattggcattgcggctccatccggataaaaatcctggtgatgaggtgattctttaaggccgcttgttatgctgt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36604210 |
acaagaaataaagaaggcctattacaaattggcattgcggctccatccggataaaaatcctggtgatgaggtgattctttaaggctgcttgttatgctgt |
36604111 |
T |
|
| Q |
400 |
ggattgcgtttatactttattatttgtttgttggcttttttgggttggtaattataattacttgtgttcatacaggaggctaaagagaaattccagcaat |
499 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36604110 |
ggattgcgtttatattttattatttgtttgttggcttttttgggttggtaattataattacttgtgttcatacaggaggctaaagagaaattccagcaat |
36604011 |
T |
|
| Q |
500 |
tgcaaaaagttatttccattcttggagatgaagagaaacgggctctctatgatcagactggttgcattgatgatgatgt |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36604010 |
tgcaaaaagttatttccattcttggagatgaagagaaacgggctctctatgatcagactggttgcattgatgatgatgt |
36603932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 20989668 - 20989771
Alignment:
| Q |
268 |
taggttcttggtttggagaaaacggcctctcaacaagaaataaagaaggcctattacaaattggcattgcggctccatccggataaaaatcctggtgatg |
367 |
Q |
| |
|
|||||||||||| ||||||| || || || ||||||||||||||||||| ||| | |||||||| ||| | || ||||| ||||| ||||||||||||| |
|
|
| T |
20989668 |
taggttcttggtgtggagaagacagcaactaaacaagaaataaagaaggcgtatcataaattggcgttgagacttcatcctgataagaatcctggtgatg |
20989767 |
T |
|
| Q |
368 |
aggt |
371 |
Q |
| |
|
|||| |
|
|
| T |
20989768 |
aggt |
20989771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 563
Target Start/End: Original strand, 20991006 - 20991097
Alignment:
| Q |
472 |
caggaggctaaagagaaattccagcaattgcaaaaagttatttccattcttggagatgaagagaaacgggctctctatgatcagactggttg |
563 |
Q |
| |
|
||||| ||||||| || || |||||||||||||| ||||| |||||||| || |||||||| |||||||| || |||||| | |||||||| |
|
|
| T |
20991006 |
caggaagctaaagccaagtttcagcaattgcaaaatgttatctccattctcggggatgaagaaaaacgggcactttatgatgaaactggttg |
20991097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5630645 - 5630720
Alignment:
| Q |
1 |
acacattgtaaacaccttgggtaattaagaatcattcgaggaaggattcaatgtttttctattgaatcgtagagtga |
77 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||| || ||| ||||||| ||| ||||||||||| |||||||| |
|
|
| T |
5630645 |
acacattgtaaacaccttaggtaattatgaataattaga-gaaagattcaagctttctctattgaatcctagagtga |
5630720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University