View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21220_low_20 (Length: 239)
Name: NF21220_low_20
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23121635 - 23121422
Alignment:
| Q |
1 |
attttttaaagaataagttacttgattttcctttgggtttaaaatatatgtgcaatggactttatttcatgtcattggtatgtcttacatcaaaagatta |
100 |
Q |
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| T |
23121635 |
attttttaaagaataagttacttgattttccttttggtttaaaatatatgtgcaatggactttatttcatgttattggtatgtcttacgtcaaaagatta |
23121536 |
T |
|
| Q |
101 |
acattacaaatttaggcatgatgattgttggattttgtgtaaaattgaggttatagaatacacatttgcatcatccagaaaattgggagagtgaaagggg |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |
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| T |
23121535 |
acattacaaatctaggcatgatgattgttggattttgtgtaaaattgaggttatagaatacacatttgcatcatcgaggaaattgggagagtgaaagagg |
23121436 |
T |
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| Q |
201 |
aatagcacatgctt |
214 |
Q |
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|||||||||||||| |
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| T |
23121435 |
aatagcacatgctt |
23121422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 22630929 - 22631138
Alignment:
| Q |
1 |
attttttaaagaataagttacttgattttcctttgggtttaaaatatatgtgcaatggactttatttcatgtcattggtatgtcttacatcaaaagatta |
100 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22630929 |
attttttaaagaataagttccttgattttccttttggtttaaaatatatgtgcaatggactttatttcatgttattggtatgtcttacatcaaaagatta |
22631028 |
T |
|
| Q |
101 |
acattacaaatttaggcatgatgattgttggattttgtgtaaaattgaggttatagaatacacatttgcatcatccagaaaattgggagagtgaaagggg |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
22631029 |
acattacaaatctaggcatgatgattgttggattttgtgtaaaattgaggttatagaatacacatttgcatcatccaggaaattgggagagtgaaagagg |
22631128 |
T |
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| Q |
201 |
aatagcacat |
210 |
Q |
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| T |
22631129 |
aatagcacat |
22631138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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