View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21220_low_3 (Length: 525)
Name: NF21220_low_3
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 214 - 515
Target Start/End: Original strand, 25889740 - 25890041
Alignment:
| Q |
214 |
agtctgaaagttaattattcatattgtaatcaattgataaatgttaacaatcattataaatgtactgttttgcattacgttcatcagttaccagttctat |
313 |
Q |
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| T |
25889740 |
agtctgaaagttaattattcatattgtaatcaattaagaaatgttaacaatcattataaatgtattgtattgcattacgttcaacagttaccagttctat |
25889839 |
T |
|
| Q |
314 |
gctatgcatagcaagaaatatatccttgtattttgttggtttgaggttatnnnnnnnnnnnnnnnnnggtttttattgctcttcatgggcatatgattgg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
25889840 |
gctatgcatagcaagaaatatatccttgtattttgttggtttgtggttataaaaggaaaagaagaaaggtttttattgctcttcatgggcatatgattgg |
25889939 |
T |
|
| Q |
414 |
atgttgttttcatattcttagactgaatatagatcttgtatgctgtacaggactctccaatacgtgaacctgccgaaaattttcttacattgagggcctt |
513 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25889940 |
atgttgttttcatattcttaaactgaatatagatcttgtatgctgtacaggactctccaatacgtgaacctgccgaacattttcttacattgagggcctt |
25890039 |
T |
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| Q |
514 |
tg |
515 |
Q |
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|| |
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| T |
25890040 |
tg |
25890041 |
T |
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