View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21220_low_6 (Length: 359)
Name: NF21220_low_6
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 5105580 - 5105914
Alignment:
| Q |
22 |
aagtgaaattgttggaagatatacacaagagctaagagcattggcactgaggattttagacctaatttctgagggattggaactcaatccaaattacttt |
121 |
Q |
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| T |
5105580 |
aagtgaaattgttggaagatatacacaagagctaagagcattggcactgaggattttagacctaatttctgagggattggaactcaatccaaattacttt |
5105679 |
T |
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| Q |
122 |
gctggagaactgagtgatagcccagtagtgatatctcatcactaccctccttgtccagaaccaagtttaacattgggagcacctcaacataaagatccta |
221 |
Q |
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| T |
5105680 |
actggagaattgagtgatagcccagtagtgatatctcatcactaccctccttgtccagaaccaagtttaacattgggagcaccacaacacaaagatccaa |
5105779 |
T |
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| Q |
222 |
acattataacgatccttttccaacaaccagagattattgcacttcaaatattgaaagatggtgcatggattcctattgagccaattcctaatgcctttgt |
321 |
Q |
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| T |
5105780 |
acattctaacaattcttttccaacaaccagagatcacagcacttcaaatattgaaggatggtgcatggattcctattgagccaattccgaatgcctttgt |
5105879 |
T |
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| Q |
322 |
aattaacatggggtttatgcttcagggacgtattc |
356 |
Q |
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| T |
5105880 |
agttaacatggggtttatgctttaggtacgtattc |
5105914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 5111800 - 5112129
Alignment:
| Q |
18 |
ttttaagtgaaattgttggaagatatacacaagagctaagagcattggcactgaggattttagacctaatttctgagggattggaactcaatccaaatta |
117 |
Q |
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| T |
5111800 |
ttttcagtgaaattgttggaaaatatacacaagaactaagagcactagggctgagaattttggatctgatttctgaagggttgggactaagccctaatta |
5111899 |
T |
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| Q |
118 |
ctttgctggagaactgagtgatagcccagtagtgatatctcatcactaccctccttgtccagaaccaagtttaacattgggagcacctcaacataaagat |
217 |
Q |
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| T |
5111900 |
cttctctgaagaactaagtgctaatccagtacttatatctcataactaccctccttgtccagaaccaagtttaacattgggagcatcaagccacaaagat |
5111999 |
T |
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| Q |
218 |
cctaacattataacgatccttttccaacaaccagagattattgcacttcaaatattgaaagatggtgcatggattcctattgagccaattcctaatgcct |
317 |
Q |
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|| |||||| |||| || ||||| ||| ||||| | || | |||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
5112000 |
ccaaacattctaaccattctttttcaagaaccaaatatcactgcacttcaagtcttgaaagatggggcatggattcctgttgagccaattcctaatgctt |
5112099 |
T |
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| Q |
318 |
ttgtaattaacatggggtttatgcttcagg |
347 |
Q |
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|||| |||| |||||| |||||||||||| |
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| T |
5112100 |
ttgttgttaatatggggcttatgcttcagg |
5112129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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