View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21220_low_8 (Length: 319)
Name: NF21220_low_8
Description: NF21220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21220_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 30655335 - 30655060
Alignment:
| Q |
17 |
ataacaataataccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcaacaaaaaatccaccttta |
116 |
Q |
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| T |
30655335 |
ataacaataacaccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcagcaaaaactccaccttta |
30655236 |
T |
|
| Q |
117 |
aaaccccttaagagctaataccacccaaaagatgcaacca------ccacacccaagcaaacacctataacacttcaccaccgctctttcaagccaccgt |
210 |
Q |
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| T |
30655235 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccactaccacgcccaagcaaacacctataacacttcaccaccactctttcaagccaccgt |
30655136 |
T |
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| Q |
211 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaacagatcc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30655135 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaaaagatcc |
30655060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 38929003 - 38928879
Alignment:
| Q |
162 |
cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcc |
261 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
38929003 |
cccaagcaaacacctataacacttcaccatcgctctttcaagccaccataacaaccccaaaacaccgtacaaaacctcacatcaacacccataagtctcc |
38928904 |
T |
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| Q |
262 |
caagaccatccaccaaaacagatcc |
286 |
Q |
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| T |
38928903 |
caagaccctccaccaaaacaaatcc |
38928879 |
T |
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