View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21221_high_3 (Length: 404)
Name: NF21221_high_3
Description: NF21221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21221_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 75 - 389
Target Start/End: Original strand, 22480977 - 22481284
Alignment:
| Q |
75 |
ataaaagctaatgaaatataaaagttaggagaggtctgaaccgcatacaagattaattcataatagtacgagagaaaggtaaacctaagttctaactatc |
174 |
Q |
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| T |
22480977 |
ataaaagctaatgaaatataaaagtcaggagaggcctgaacctcatacaagattagttcataatagtacgagagaaaggtaaacctaag------ctttc |
22481070 |
T |
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| Q |
175 |
tctcgaaagaaaagcagaaataaaagagggaggggacgaccaccattgggaggaatacaaagcaagaccctgcccattcttagccatagcatccacaacc |
274 |
Q |
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| T |
22481071 |
tctcaaaagaaaagcagaaataaaagggggaggggaggaccaccagcgggaggaatacaa-gcaagaccctgcccattcttagccatagcatccgcagcc |
22481169 |
T |
|
| Q |
275 |
atgttatcttccctaagaatatgagtgcatctgcaattaattttcatactaaactgcttgcaattaagccatctgttaagcatctgccaaaggacaccta |
374 |
Q |
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| T |
22481170 |
atattaccttccctaagaatatgagtgcatctgcaattaatcttcatacaaaactgcttgcaattaagccatctgctaagcatctgccaagagacacctg |
22481269 |
T |
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| Q |
375 |
agattttatcaaaag |
389 |
Q |
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||| ||||||||||| |
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| T |
22481270 |
agactttatcaaaag |
22481284 |
T |
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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 3934383 - 3934434
Alignment:
| Q |
15 |
atcattcttgttaaaaagttactctaaatattgacaattgattttaatatac |
66 |
Q |
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| T |
3934383 |
atcattcttgttaaaaagttactctaaatattgacaattgattttaatatac |
3934434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 25330363 - 25330405
Alignment:
| Q |
168 |
aactatctctcgaaagaaaagcagaaataaaagagggagggga |
210 |
Q |
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| T |
25330363 |
aactatctctcaaaagaaaagcagagagaaaagagggagggga |
25330405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 30776288 - 30776329
Alignment:
| Q |
168 |
aactatctctcgaaagaaaagcagaaataaaagagggagggg |
209 |
Q |
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| T |
30776288 |
aactatctctcaaaagaaaagcagagagaaaagagggagggg |
30776329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 1033172 - 1033112
Alignment:
| Q |
169 |
actatctctcgaaagaaaa-gcagaaataaaagagggaggggacgaccaccattgggagga |
228 |
Q |
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|||||||||| |||||||| | ||||||||||| ||||||||| |||||||| || ||||| |
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| T |
1033172 |
actatctctcaaaagaaaaagaagaaataaaagggggaggggatgaccaccactgtgagga |
1033112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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