View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21221_low_4 (Length: 360)
Name: NF21221_low_4
Description: NF21221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21221_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 30016950 - 30017262
Alignment:
| Q |
5 |
agtgatagcaatagcatgtttaagatgagaatgaaaaaagtagaacacaaaataagaacta--actttaactcaaagcagaaagagttgttattttgtat |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30016950 |
agtgatagcaatagcatgtttaagatgagaatgaaaaaa------------ataagaactataactttaactcaaagcagaaagagatgttattttgtat |
30017037 |
T |
|
| Q |
103 |
ctttaggtcttttgtttgtttctatttgtttcatgtaggacttgaactttannnnnnnn-atcttattattttagtaatcagcagtgttatatcttgcga |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30017038 |
cttttggtcttttgtttgtttctatttgtttcatgtaggacttgaactttttttttttttatcttattattttagtaatcagcagtgttatatgttgcga |
30017137 |
T |
|
| Q |
202 |
aacatgcactcacgaagtgatcacgataacaaatggaccaacaagttgttattggacggaatacaccgagacttgtggaaatcatgggagtcaatttatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
30017138 |
aacatgcactcacgaagtgatcacgataacaaatggaccaacaagttgttattggacggaatacaccgagacttgtggaaattatgggagtcgatttatg |
30017237 |
T |
|
| Q |
302 |
attatccaatccaatataatataat |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30017238 |
attatccaatccaatataatataat |
30017262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University