View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21222_high_1 (Length: 720)
Name: NF21222_high_1
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 19 - 713
Target Start/End: Complemental strand, 34788524 - 34787830
Alignment:
| Q |
19 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttttca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34788524 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacaaatcataattcaatggatttttca |
34788425 |
T |
|
| Q |
119 |
taacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
34788424 |
taacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgctgcaaacttccgata |
34788325 |
T |
|
| Q |
219 |
caaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34788324 |
caaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctacctccttacacctttcctcaaactccgcaaac |
34788225 |
T |
|
| Q |
319 |
gccacaaaaagcagctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaact |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34788224 |
gccacaaaaagcagctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaact |
34788125 |
T |
|
| Q |
419 |
ttgcataacgaatccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34788124 |
ttgcataacgaatccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattt |
34788025 |
T |
|
| Q |
519 |
tatataagataaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatga |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34788024 |
tatataagataaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatga |
34787925 |
T |
|
| Q |
619 |
atatacttataccacaactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctc |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34787924 |
atatacttataccacaactgatcaacccgcggcaaaagagtaaccgcgcgatcccaaacattccgagcatgattaataaacttattcttcatctc |
34787830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 713
Target Start/End: Original strand, 2292670 - 2293367
Alignment:
| Q |
19 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttttca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
2292670 |
atagctctctcataaacctccctagttctttccttattcccaacactctcttccaatcttatataatcaaaccatgaatcataattcaacggatttttcc |
2292769 |
T |
|
| Q |
119 |
taacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgata |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
2292770 |
tcacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgccacaaacttccgata |
2292869 |
T |
|
| Q |
219 |
caaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaac |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
2292870 |
caaatcctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcccgctcagcctccttacacctttcctcaaactccgcaaaa |
2292969 |
T |
|
| Q |
319 |
gccacaaaaagcagctctgcttcctcatcatccgctag---ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaa |
415 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2292970 |
gccacaaaaagcagctcagcttcctcatcatccgcaagcttctccaccgctctttcataaacattcctcgccttaggaacctcgccattcttcatctcaa |
2293069 |
T |
|
| Q |
416 |
actttgcataacgaatccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaa |
515 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
2293070 |
acttcgcataacgtatccaagcaccaaccctaggatgacacaatacaaatctctcgaaaatccctctagctcgttcaatctcattatatctcagctcaaa |
2293169 |
T |
|
| Q |
516 |
ttttatataagataaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccata |
615 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2293170 |
ttttatataagatagccatccttgctgatccggcatccatttcatccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccata |
2293269 |
T |
|
| Q |
616 |
tgaatatacttataccacaactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctc |
713 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
2293270 |
tgaatatacttataccacaactgatccactcgtggcaaaagagtaacagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctc |
2293367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 2597822 - 2598110
Alignment:
| Q |
19 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttttca |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2597822 |
atagctctctcataaacctccatagttctttccttattcccgacactctctttccatcttatataatcaaaccat-aatcataattcaacagatttttcc |
2597920 |
T |
|
| Q |
119 |
taacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccattctgtttctcaaatgctacaaacttccgata |
218 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||| |
|
|
| T |
2597921 |
tcacttcatcttcatattgaaaccttctcttcccaacaatagcatcctcaatcccttccctatcaccatactgtttctcaaatgccacaaatttcccata |
2598020 |
T |
|
| Q |
219 |
caaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaa |
308 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| || |||||||||||||||| |||||| | ||||||| |||||||||||| |||| |
|
|
| T |
2598021 |
caaatcctcagccctccccttcggaatataatcaattggaaatttataaatacacatcgcacactctgcctcattacacctttccacaaa |
2598110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 49276444 - 49276540
Alignment:
| Q |
19 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatataatcaaaccacgaatcataattcaatggatttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||| |||||||| |||||||| || || ||||||| |
|
|
| T |
49276444 |
atagctctctcataaacctccctagttttttccttatcccctacactttcttccaatcgtatatattcaaaccaggaatcatagttgaaaggatttt |
49276540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 49280001 - 49280065
Alignment:
| Q |
19 |
atagctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatata |
83 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||| ||||| |||||||||| |||||| |
|
|
| T |
49280001 |
atagctctctcataaacctccctagttttttcctcatcccccacactttcttccaatcgtatata |
49280065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 357 - 713
Target Start/End: Original strand, 33635664 - 33636020
Alignment:
| Q |
357 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacac |
456 |
Q |
| |
|
|||||| ||||||||||||||| | || ||| ||||||| || ||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
33635664 |
ctccacagctctttcataaacacttcttgccctaggaacttcaccattcttcatctcaaatttcgcataacgtaaccaagcaccaacactaggatgacat |
33635763 |
T |
|
| Q |
457 |
aaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccact |
556 |
Q |
| |
|
|||||| ||||||||| ||||| ||||| || ||||| || | || ||| ||||||| ||||| | |||| | |||||||| |||||||| | |
|
|
| T |
33635764 |
gtaacaaaaagctcgaaaattcctctaagtcgttcgatttcattgtactttagttcatattttatgtaagagagccatgcatgctgatcaggcatccatt |
33635863 |
T |
|
| Q |
557 |
tcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaag |
656 |
Q |
| |
|
|||||| |||||||||||| || | || || ||||||||||| |||| ||||||||| || |||| ||||||||| |||| |||||||| ||||| |
|
|
| T |
33635864 |
ccatccacctctcgaaaacctctctaactccggcgacattgccaagaatcttctccatatgtatgtactcataccacaattgatggacccgcggtaaaag |
33635963 |
T |
|
| Q |
657 |
agtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctc |
713 |
Q |
| |
|
| |||| ||||| || ||||||||| |||||||| | || ||||||||||||| |
|
|
| T |
33635964 |
aataacagcgcgatcgtaaacattccttgcatgattgacgaatctattcttcatctc |
33636020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 24602230 - 24602074
Alignment:
| Q |
21 |
agctctctcataaacctccctagttctttccttattcccgacactctcttccaatcttatata----atcaaaccacgaatcataattcaatggattttt |
116 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||| |||||||| |||||| ||||||| ||||||||| |||||||||||||| ||||| | |
|
|
| T |
24602230 |
agctctctcataaacctccttggttgtttccttattcctgacactct--tccaatattatatatataatcaaaccaagaatcataattcaagcgatttat |
24602133 |
T |
|
| Q |
117 |
cataacttcatcttcatactgaaaccttctcttcccaacaatagcatcctcaatccctt |
175 |
Q |
| |
|
| | ||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
24602132 |
cctcgcttcatctttggactgaaaccttctcttcccaacaatagcatctttaatccctt |
24602074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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