View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_high_2 (Length: 522)
Name: NF21222_high_2
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 15360702 - 15361039
Alignment:
| Q |
16 |
atcaagttgaaaggtcagagttcgtataattatttgaagatgagaagcatcatcattatcaatgtatgatatattactttggactatagattgtgaacta |
115 |
Q |
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| T |
15360702 |
atcaagttgaaaggtcagagttcatataattatttgaagatgagaagcatcatca------atgtatgatatattactttggacaatagattgtgaacta |
15360795 |
T |
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| Q |
116 |
acttttcaatctagattggttatttacgaaataatgagagagaagaatgataaaggaactcattttctcttcatccaaactgccaaccatccctttttct |
215 |
Q |
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| T |
15360796 |
atttttcaatctagattggttatttacgaaataatgagaaagaagaatgataaaggaactcattttctcttcatccaaactgccaaccatccctttttct |
15360895 |
T |
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| Q |
216 |
cctctttttcacctctctccgttgcatttcctctcatcaaccaaacagagtgtatatcgattcttaattcttaattcttatatctgatgtagggatctca |
315 |
Q |
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| T |
15360896 |
cctctttttcacctctctccgttgcatttcctctcatcaaccaaacagagtgtatatcg-------attcttaattcttatatctgatgtagggatctca |
15360988 |
T |
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| Q |
316 |
tcttctccatattggattgaaataacttagtcccttttcttttttccccca |
366 |
Q |
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| T |
15360989 |
tcttctccatattggattgaaataacttagtcccttttcttttttccccca |
15361039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 367 - 506
Target Start/End: Original strand, 15361078 - 15361217
Alignment:
| Q |
367 |
ctttaaaactaacactctcttgttatattatttactgatgttctagggaggagaagaaagaggaaaattgatttcaatccctacagacctcaccagcagt |
466 |
Q |
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| T |
15361078 |
ctttaaaactaacactctcttgttatattatttactgatgttctagggaggagaagaaagaggaaaattgatttcaatccctacagacctcaccagcagt |
15361177 |
T |
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| Q |
467 |
gtgtgcctcaagcacactaggccaccctttataggcatta |
506 |
Q |
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| T |
15361178 |
gtgtgcctcaagcacactaggccaccctttataggcatta |
15361217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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