View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_high_7 (Length: 369)
Name: NF21222_high_7
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 31755538 - 31755194
Alignment:
| Q |
16 |
catttgagtctgagttagcttttttgtcgcgtttacatcataaacacttggttagactagttggttattgtgaggagaaagatgagaggcttttggtgta |
115 |
Q |
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| T |
31755538 |
catttgagtctgagttagcttttttgtcgcgtttacatcataaacacttggttagactagttggttattgtgaggagaaagatgagaggcttttggtgta |
31755439 |
T |
|
| Q |
116 |
tgattacatgaagaatggttcattgcatagtcatttgcatgataagaataatgtagaaaaaggtagcaatttgttgaattcatggaaaatgaggataaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31755438 |
tgattacatgaagaatggttcattgcatagtcatttgcatgataagaataatgtagaaaaaggtagcaatttgttgaattcatggaaaatgaggataaaa |
31755339 |
T |
|
| Q |
216 |
attgctttggatgcatcaagaggaatagaatatctacataattatgcagttccttcaataattcatagagatattaagtcatcaaacattcttcttgatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31755338 |
attgctttggatgcatcaagaggaatagaatatctacataattatgcagttccttcaataattcatagagatattaagtcatcaaacattcttcttgatt |
31755239 |
T |
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| Q |
316 |
cgacttggacagcaagagtgtctgattttggattatcattgatga |
360 |
Q |
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| T |
31755238 |
cgacttggacagcaagagtatctgattttggattatcattgatga |
31755194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 63 - 316
Target Start/End: Complemental strand, 25740564 - 25740311
Alignment:
| Q |
63 |
ttggttagactagttggttattgtgaggagaaagatgagaggcttttggtgtatgattacatgaagaatggttcattgcatagtcatttgcatgataaga |
162 |
Q |
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| T |
25740564 |
ttggtgagactaattggtttttgtgaggagaatgatgagaggcttttggtgtatgagtacatgagtaatggatcattacatgatcatttgcatgataaga |
25740465 |
T |
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| Q |
163 |
ataatgtagaaaaaggtagcaatttgttgaattcatggaaaatgaggataaaaattgctttggatgcatcaagaggaatagaatatctacataattatgc |
262 |
Q |
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||||||| |||||| ||| | | || ||||||||||||||||| || ||| |||| || ||||| |||| ||||| || || | ||||| || || |
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| T |
25740464 |
ataatgttgaaaaaaatagtagcattttaaattcatggaaaatgagaatcaaagttgcattagatgctgcaaggggaattgagtacattcataactacgc |
25740365 |
T |
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| Q |
263 |
agttccttcaataattcatagagatattaagtcatcaaacattcttcttgattc |
316 |
Q |
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|| || | || |||||| |||||||||| || |||||||| ||||||||||| |
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| T |
25740364 |
ggtaccaccgattattcatcgagatattaaatcctcaaacatacttcttgattc |
25740311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 35558744 - 35558411
Alignment:
| Q |
16 |
catttgagtctgagttagcttttttgtcgcgtttacatcataaacacttggttagactagttggttattgtgaggagaaagatgagaggcttttggtgta |
115 |
Q |
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||||||||||||| ||||| ||||||||||| ||||||| || || |||||||||||||| |||| ||| || ||||||||||| ||||||||||| || |
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| T |
35558744 |
catttgagtctgaattagcctttttgtcgcgcctacatcacaagcatttggttagactagtcggtttttgcgacgagaaagatgaaaggcttttggttta |
35558645 |
T |
|
| Q |
116 |
tgattacatgaagaatggttcattgcatagtcatttgcatgataagaataatgtagaaaaaggtagcaatttgttgaattcatggaaaatgaggataaaa |
215 |
Q |
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||| | ||||||||||||| ||||| || ||||||||| || || || || || || || ||| | ||| |||||||| |||||||||||||| ||| |
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| T |
35558644 |
tgagttcatgaagaatggtgcattgtatgatcatttgcacgacaaaaacaacgttgacaagaatagtagtttattgaattcttggaaaatgaggatcaaa |
35558545 |
T |
|
| Q |
216 |
attgctttggatgcatcaagaggaatagaatatctacataattatgcagttccttcaataattcatagagatattaagtcatcaaacattcttcttgatt |
315 |
Q |
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| || |||||||| ||| | ||||| || ||||| |||||||| |||||||| |||||||||||| |||| || |||||||| |||||||| |||| |
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| T |
35558544 |
gtcgcattggatgcttcacgtggaattgagtatctccataattacgcagttccatcaataattcatcgagacatcaagtcatcgaacattctcattgacg |
35558445 |
T |
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| Q |
316 |
cgacttggacagcaagagtgtctgattttggatt |
349 |
Q |
| |
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|| ||||||||| |||||||||||||| ||||| |
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| T |
35558444 |
cggattggacagctagagtgtctgatttcggatt |
35558411 |
T |
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