View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_high_8 (Length: 342)
Name: NF21222_high_8
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 39870259 - 39870008
Alignment:
| Q |
31 |
gaacagttagattaaaaaggaacactgatttaatcatagaccacacataccatatcttttttacattatcttcaacctcatgagattgaatctcacccac |
130 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
39870259 |
gaacagttagattaaagaggaacactgatttaataatagaccacacataccatatcttttttacactgtcttcaacctcatgagattgaatttcacccac |
39870160 |
T |
|
| Q |
131 |
gtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcatagaaacaacacaaattcacaccaattattttttcctctcccaattgttc |
230 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |
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| T |
39870159 |
atccactatcacggaaggatgaatcccattttcttcactgctcacagtcatagaaacaacataaattcacaccaagta-tttttcctctcccaattgttc |
39870061 |
T |
|
| Q |
231 |
ctaaaataagacctattcaaactaattacttacttatttactaacatctagtt |
283 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39870060 |
ctaaaataagacttattcaaactaattacttacttatttactaacatctagtt |
39870008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 36013975 - 36013696
Alignment:
| Q |
1 |
agttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccatatcttttttacattatc |
100 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
36013975 |
agttgtttaccaccatgggaaagtttttttgaacagttagattaaagtggaacactgatttaatcatagaccacacataccatatcttttttacagt--c |
36013878 |
T |
|
| Q |
101 |
ttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcatagaaacaacacaaattcac |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36013877 |
ttcaacctcatgagattgaatttcacccacatccactatcacggaaggatgaatcccattttcttcactgctcacagtcatagaaacaacacaaattcac |
36013778 |
T |
|
| Q |
201 |
accaattattttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttatttactaacatctagtt |
283 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36013777 |
accaagta-tttttcctctcccaattgttcctaaaataagacttattcaaactaattacttacttatttactaacatccagtt |
36013696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 47326812 - 47326540
Alignment:
| Q |
1 |
agttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccatatcttttttacattatc |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
47326812 |
agttgtttcccaccatgggaaagtttttttgaacagttagattaaagaggaacactgatttaatcatagaccacacataccatatcttttttacactgtc |
47326713 |
T |
|
| Q |
101 |
ttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcatagaaacaacacaaattcac |
200 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
47326712 |
ttcaatctc--gagattgaatttcacccacatccactatcaccgaa-------tcccattttcttcactgcccacagtcatagaaacaacacaaattcac |
47326622 |
T |
|
| Q |
201 |
accaattattttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttatttactaacatctagtt |
283 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
47326621 |
accaagtattttt-cctctcccaattgttcttaaaataagacttattcaaactaattacttacttatttactaacatccagtt |
47326540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 47341608 - 47341336
Alignment:
| Q |
1 |
agttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccatatcttttttacattatc |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
47341608 |
agttgtttcccaccatgggaaagtttttttgaacagttagattaaagaggaacactgatttaatcatagaccacacataccatatcttttttacactgtc |
47341509 |
T |
|
| Q |
101 |
ttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcatagaaacaacacaaattcac |
200 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
47341508 |
ttcaatctc--gagattgaatttcacccacatccactatcaccgaa-------tcccattttcttcactgcccacagtcatagaaacaacacaaattcac |
47341418 |
T |
|
| Q |
201 |
accaattattttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttatttactaacatctagtt |
283 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
47341417 |
accaagtattttt-cctctcccaattgttcttaaaataagacttattcaaactaattacttacttatttactaacatccagtt |
47341336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 55514210 - 55514149
Alignment:
| Q |
209 |
ttttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttattta |
270 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
55514210 |
ttttttcctctcccaattgtttctaaaataagacttattcaaactaattatttatttattta |
55514149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 55514335 - 55514254
Alignment:
| Q |
55 |
ctgatttaatcatagaccacacataccatatcttttttacattatcttcaacctcatgagattgaatctcacccacgtccac |
136 |
Q |
| |
|
||||||||||||||||| || || |||||||||| ||||| || |||||||||||||| ||||||| || |||||||||||| |
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|
| T |
55514335 |
ctgatttaatcatagactactcacaccatatcttgtttactttgtcttcaacctcatgggattgaaactaacccacgtccac |
55514254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 39112499 - 39112546
Alignment:
| Q |
209 |
ttttttcctctcccaattgttcctaaaataagacctattcaaactaat |
256 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| || ||||||||||||| |
|
|
| T |
39112499 |
ttttttcctctcccaactgtttctaaaataaaacttattcaaactaat |
39112546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 31598817 - 31598544
Alignment:
| Q |
1 |
agttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccatatcttttttacattatc |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | || |
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|
| T |
31598817 |
agttgtttcccaccatgggaaagtttttttgaacagttagattaaagaggaacactgatttaatcatagaccacacataccatatctttt--acactgtc |
31598720 |
T |
|
| Q |
101 |
ttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcatagaaacaacacaaattcac |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
31598719 |
ttcaacctcatgagattgaatttcacccacatccactatcacggaaggatgaatcccattttcttcattgctcacagtcatagaaacaacacaaattgac |
31598620 |
T |
|
| Q |
201 |
accaattattttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttatttactaacat |
277 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
31598619 |
accaagta-tttttcctctcccaattgttcctaaaataagacttattcaaaataattacttacttatttattaacat |
31598544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 83 - 283
Target Start/End: Original strand, 16765351 - 16765550
Alignment:
| Q |
83 |
tatcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcata |
182 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||||| |||||| ||||| |
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|
| T |
16765351 |
tatcttttttacactttcttcaacctcatgagattgaatttcacccacatccactatcatgaaaggatgaatcccattttcttcactactcacaatcata |
16765450 |
T |
|
| Q |
183 |
gaaacaacacaaattcacaccaattattttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttatttactaacatctagt |
282 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
16765451 |
gaaacaacacaaattgacaccaagta-tttttcctctcccaattgttcctaaaataagacttattcaaactaattacttactgatttactaacatccagt |
16765549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 16764950 - 16765040
Alignment:
| Q |
1 |
agttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccatatcttttt |
91 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
16764950 |
agttgtttcccaccatggggaagtttttttgaacaattagattaaagaggaacacttatttaatcatagaccacacataccatatgttttt |
16765040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 9142120 - 9142191
Alignment:
| Q |
49 |
ggaacactgatttaatcatagaccacacataccatatcttttttacattatcttcaacctcatgagattgaa |
120 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||| ||||| || |||||||||||||| ||||||| |
|
|
| T |
9142120 |
ggaacactgatttaatcatagactacccacaccatatcttgtttactttgtcttcaacctcatgggattgaa |
9142191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 9142226 - 9142307
Alignment:
| Q |
185 |
aacaacacaaattcacaccaattattttttcctctcccaattgttcctaaaataagacctattcaaactaattacttacttattta |
270 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||||||| | ||| ||||| ||||||||||||||| ||| ||||||| |
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|
| T |
9142226 |
aacaacacaaattcatactaatt--tttttcctctcccaattgtt--tcaaaaaagacttattcaaactaattatttatttattta |
9142307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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