View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_low_12 (Length: 297)
Name: NF21222_low_12
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 14014914 - 14014644
Alignment:
| Q |
20 |
actaaatgttccgaatttagttgacttgattcataagattgccgttcctagaattaaaggtcccgatgagtttttt-ggattcatttgattgatggcgat |
118 |
Q |
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| T |
14014914 |
actaaatgttccgaatttagttgacttgattcataagattgccgttcctagaattaaaggtcccgatgagtttttttggattcatttgattgatggcgat |
14014815 |
T |
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| Q |
119 |
atcactttctgaggcgcgttcacttttaaagaccgcccggctagcttatttcttgggctaagaacatctgacacagagacatcccccgactaagtcttag |
218 |
Q |
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| T |
14014814 |
atcactttctgaggcgcgttcacttttaaagaccgcccggctagcttatttcttgggctaagaacatctgacacagagacatcccccgactaagtcttag |
14014715 |
T |
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| Q |
219 |
attgtttggagacttattcataataagttacccactaatgatattgaggaatatatgattgtccctatgct |
289 |
Q |
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| T |
14014714 |
attgtttggagacttactcataataagttacccactaatgatattgaggattatatgattgtccctatgct |
14014644 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 34798763 - 34798835
Alignment:
| Q |
182 |
acatctgacacagagacatcccccgactaagtcttagattgtttggagacttattcataataagttacccact |
254 |
Q |
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|||| ||||||| ||||||||||||| ||||| || |||| ||||||||||||||||| | ||||| ||||| |
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| T |
34798763 |
acatatgacacaaagacatcccccgattaagtatttgatttcttggagacttattcatactgagttaaccact |
34798835 |
T |
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