View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_low_13 (Length: 292)
Name: NF21222_low_13
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_low_13 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 31929728 - 31929454
Alignment:
| Q |
18 |
agtaaccaagagactgaggagaagggtgattaaatggagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaaacaaaattgaa |
117 |
Q |
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| T |
31929728 |
agtaaccaagagagtgaggagaagggtgattaaatggagaagattaataactcgtgagatccatctaacgtgaaaatatgtgcctagaaacaaaattgaa |
31929629 |
T |
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| Q |
118 |
tctcttaaattaaatnnnnnnnnttataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaaggatcc |
217 |
Q |
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| T |
31929628 |
tctcttaaattaaataaaaaaaattataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaaggatcc |
31929529 |
T |
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| Q |
218 |
atgctaaggataaattaagaattgcatatatgtatataataaatgaatgtaaattaagttgcagatttatattga |
292 |
Q |
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| T |
31929528 |
atgctaaggataaattaagaattgcatatatgtatataataaatgaatgtaaattaagttgcagatttatattga |
31929454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 31897778 - 31897499
Alignment:
| Q |
7 |
gtgagatgaaaagtaaccaagagactgaggagaagggtgattaaatggagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaa |
106 |
Q |
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| T |
31897778 |
gtgagatcaaaagtaaccaagagactgaggagaagggtgattaaatggagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaa |
31897679 |
T |
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| Q |
107 |
acaaaattgaatctcttaaattaaatnnnnnnnnttataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctacc |
206 |
Q |
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| T |
31897678 |
acaaaattgaatctcttaaaataaa--ataaaaatgataattgagatccatgaaatacatatgtttgtatgtaaacaagaat-aaatacattgttctacc |
31897582 |
T |
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| Q |
207 |
ataaaggatccatgctaaggataaattaagaattgcatatatgtatataataaatgaatgtaaattaagttgcagatttatat |
289 |
Q |
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| T |
31897581 |
acaaaggatccatgctaaggataatttaagaattggatataagtatataataaatgaatgtaaatcaagttgcagatttatat |
31897499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 31863533 - 31863307
Alignment:
| Q |
32 |
tgaggagaagggtgattaaatggagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaaacaaaattgaatctcttaaattaaa |
131 |
Q |
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| T |
31863533 |
tgaggagaagggtgattaaacggagaagattactaactcgtgagatcaatctaaagtgaagatatgtgttcagaaaaaaaattgaatcccttaaaataaa |
31863434 |
T |
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| Q |
132 |
tnnnnnnnnttataatttagatccatgaaatatatatgtttgtatgtaaacgagaataaaatacattgttctaccataaaggatccatgctaaggataaa |
231 |
Q |
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| T |
31863433 |
taaaaaaa-ttatagttttaatccatgaaatatatatgttcgtatgtaaacaagaataaa-tacattgttctaccataaaggattcatgctaaggataaa |
31863336 |
T |
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| Q |
232 |
ttaagaattgcatatatgtatataataaa |
260 |
Q |
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| T |
31863335 |
ttaagaactgaatattagtatataataaa |
31863307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 31842200 - 31842122
Alignment:
| Q |
54 |
gagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaaacaaaattgaatctcttaaattaaat |
132 |
Q |
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| T |
31842200 |
gagaggattattaacgcgtgacatccatctaaagtgaagatatgtgctaagaaacgaaattgaatctcttaaaataaat |
31842122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 31845936 - 31846029
Alignment:
| Q |
36 |
gagaagggtgattaaatggagaagattactaactcatgagatccatctaaagtgaagatatgtgcttagaaacaaaattgaatctcttaaattaaat |
132 |
Q |
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| T |
31845936 |
gagaagggtggtcaaataaagaagattacaatatcataagatcgatctaaagtgaagatatgtgc---aaaaaaaaattgaatcacttaaaataaat |
31846029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 23950829 - 23950781
Alignment:
| Q |
189 |
aaaatacattgttctaccataaaggatccatgctaaggataaattaaga |
237 |
Q |
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| T |
23950829 |
aaaatatattattctaacataaatgatccatactaaggataaattaaga |
23950781 |
T |
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