View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_low_16 (Length: 250)
Name: NF21222_low_16
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 6481344 - 6481238
Alignment:
| Q |
28 |
tcaaggtgataagttagtttgatagcatcatacacttacctacattcataaatgcgcagctaaa--atttctcctttttgtgtgctcaatgtgatagtgt |
125 |
Q |
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||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |
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| T |
6481344 |
tcaaggtgaaaagttagtttgatagcatcatactctcacctatattcataaatgcgcagccaaattttttatcctttttgtgtgctcaatgtgatagtgt |
6481245 |
T |
|
| Q |
126 |
actaaga |
132 |
Q |
| |
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||||||| |
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| T |
6481244 |
actaaga |
6481238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 6492765 - 6492659
Alignment:
| Q |
28 |
tcaaggtgataagttagtttgatagcatcatacacttacctacattcataaatgcgcagctaaa--atttctcctttttgtgtgctcaatgtgatagtgt |
125 |
Q |
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||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |
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| T |
6492765 |
tcaaggtgaaaagttagtttgatagcatcatactctcacctatattcataaatgcgcagccaaattttttatcctttttgtgtgctcaatgtgatagtgt |
6492666 |
T |
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| Q |
126 |
actaaga |
132 |
Q |
| |
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||||||| |
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| T |
6492665 |
actaaga |
6492659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 6478262 - 6478158
Alignment:
| Q |
28 |
tcaaggtgataagttagtttgatagcatcatacacttacctacattcataaatgcgcagctaaaattt--ctcctttttgtgtgctcaatgtgatagtgt |
125 |
Q |
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||||||||||||||| ||||||||||||||||| || || || ||||||||||| ||||| ||| ||| || |||||||||||||||||||||||||| |
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| T |
6478262 |
tcaaggtgataagttggtttgatagcatcatactctcacttatattcataaatgtgcagccaaatttttaatcatttttgtgtgctcaatgtgatagtgt |
6478163 |
T |
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| Q |
126 |
actaa |
130 |
Q |
| |
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||||| |
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| T |
6478162 |
actaa |
6478158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 6489683 - 6489579
Alignment:
| Q |
28 |
tcaaggtgataagttagtttgatagcatcatacacttacctacattcataaatgcgcagctaaaattt--ctcctttttgtgtgctcaatgtgatagtgt |
125 |
Q |
| |
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||||||||||||||| ||||||||||||||||| || || || ||||||||||| ||||| ||| ||| || |||||||||||||||||||||||||| |
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| T |
6489683 |
tcaaggtgataagttggtttgatagcatcatactctcacttatattcataaatgtgcagccaaatttttaatcatttttgtgtgctcaatgtgatagtgt |
6489584 |
T |
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| Q |
126 |
actaa |
130 |
Q |
| |
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||||| |
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| T |
6489583 |
actaa |
6489579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 38642485 - 38642563
Alignment:
| Q |
94 |
ttctcctttttgtgtgctcaatgtgatagtgtactaagacgacataggcatgtaaatttattacacgcctttgggacct |
172 |
Q |
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||||||| |||||||||||||||| |||||||||||| | |||||||||||||| ||| ||||||| |||||| ||||| |
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| T |
38642485 |
ttctcctatttgtgtgctcaatgtaatagtgtactaacatgacataggcatgtacattgattacacacctttgagacct |
38642563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 16684803 - 16684881
Alignment:
| Q |
94 |
ttctcctttttgtgtgctcaatgtgatagtgtactaagacgacataggcatgtaaatttattacacgcctttgggacct |
172 |
Q |
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||||||| |||||||||||||||| |||||||||||||| || |||| |||||| ||| ||||||| |||||| ||||| |
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| T |
16684803 |
ttctcctatttgtgtgctcaatgtaatagtgtactaagatgatatagacatgtacattgattacacacctttgagacct |
16684881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 28322640 - 28322595
Alignment:
| Q |
173 |
cataatttaattctttgttttt--gtgtttctgaatgttatgttca |
216 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
28322640 |
cataatttaattcttggtttttttgtgtttctgaatgttatgttca |
28322595 |
T |
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