View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_low_19 (Length: 239)
Name: NF21222_low_19
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_low_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 39625261 - 39625476
Alignment:
| Q |
23 |
aatgctcctgttcattgcatcttcatcaacatgttgcactggagctctttgaagttttttatccgcggaagaatcattaattatattatgatattatcaa |
122 |
Q |
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| T |
39625261 |
aatgctcctgatcattgcatcttcatcaacatgttgcattggagctctttgaagttttttatccgcggaagaatcattaattatgttatgatattatcaa |
39625360 |
T |
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| Q |
123 |
agcaaacttttggttaggactatgtatgatatgtattgttcctgatcattgcacctttatcaacatgttgcattggagctctttgaagttttcttatctg |
222 |
Q |
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| T |
39625361 |
agcaaacttttggttaggactatgtatgatatgtattgttcctgatcattgcacctttatcaacatgttgcattggagctctttgaagtttt-ttatctg |
39625459 |
T |
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| Q |
223 |
tagaagaatcattaatt |
239 |
Q |
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| T |
39625460 |
tagaagaatcattaatt |
39625476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 39625400 - 39625508
Alignment:
| Q |
28 |
tcctgttcattgcatcttcatcaacatgttgcactggagctctttgaagttttttatccgcggaagaatcattaattatattatgatattatcaaagcaa |
127 |
Q |
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| T |
39625400 |
tcctgatcattgcacctttatcaacatgttgcattggagctctttgaagttttttatctgtagaagaatcatta-----attatgatattataaaagcaa |
39625494 |
T |
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| Q |
128 |
acttttggttagga |
141 |
Q |
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| T |
39625495 |
acttttggttagga |
39625508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 39625242 - 39625342
Alignment:
| Q |
138 |
aggactatgtatgatatgtattgttcctgatcattgcacctttatcaacatgttgcattggagctctttgaagttttcttatctgtagaagaatcattaa |
237 |
Q |
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||||||| | |||| ||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |
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| T |
39625242 |
aggactaagcatgacatgtaatgctcctgatcattgcatcttcatcaacatgttgcattggagctctttgaagtttt-ttatccgcggaagaatcattaa |
39625340 |
T |
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| Q |
238 |
tt |
239 |
Q |
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|| |
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| T |
39625341 |
tt |
39625342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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