View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21222_low_20 (Length: 236)

Name: NF21222_low_20
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21222_low_20
NF21222_low_20
[»] chr1 (8 HSPs)
chr1 (138-218)||(41144041-41144121)
chr1 (144-217)||(41119631-41119704)
chr1 (138-218)||(41128560-41128640)
chr1 (24-81)||(49895211-49895268)
chr1 (25-81)||(1233985-1234041)
chr1 (33-77)||(17412599-17412643)
chr1 (24-81)||(8520082-8520139)
chr1 (24-81)||(17419845-17419902)
[»] chr7 (7 HSPs)
chr7 (24-81)||(258487-258544)
chr7 (24-81)||(6751699-6751755)
chr7 (36-81)||(6813067-6813112)
chr7 (36-81)||(40792801-40792846)
chr7 (21-81)||(8585146-8585206)
chr7 (25-81)||(13310414-13310470)
chr7 (24-84)||(28910090-28910150)
[»] chr5 (2 HSPs)
chr5 (36-81)||(18107697-18107742)
chr5 (24-81)||(20720539-20720596)
[»] chr8 (3 HSPs)
chr8 (24-76)||(5496619-5496671)
chr8 (24-79)||(36037248-36037303)
chr8 (36-82)||(36039782-36039828)
[»] chr3 (3 HSPs)
chr3 (24-81)||(42604966-42605023)
chr3 (26-81)||(46412051-46412106)
chr3 (24-89)||(22407422-22407487)
[»] chr4 (4 HSPs)
chr4 (33-81)||(42312897-42312945)
chr4 (26-81)||(33629719-33629774)
chr4 (24-81)||(991262-991319)
chr4 (24-81)||(33629979-33630035)
[»] chr6 (3 HSPs)
chr6 (24-81)||(15102613-15102671)
chr6 (28-81)||(16590246-16590299)
chr6 (28-81)||(16605081-16605134)
[»] chr2 (1 HSPs)
chr2 (25-82)||(5424770-5424827)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 41144041 - 41144121
Alignment:
Q  138 gaaagaacatacaagtattagatgtttaatctgccttttatccatcttttggctatcttctttggaaatgtccaacaaggc 218  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  41144041 gaaagaacatacaagtagtagatgcttaatctgtcttttatccatcttttggttatcttccttggaaatgtccaacaaggc 41144121  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 41119631 - 41119704
Alignment:
Q  144 acatacaagtattagatgtttaatctgccttttatccatcttttggctatcttctttggaaatgtccaacaagg 217  Q
    ||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  41119631 acatacaagtaatagatgtttaatttgttttttatccatcttttggctatcttctttggaaatgtccaacaagg 41119704  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 41128640 - 41128560
Alignment:
Q  138 gaaagaacatacaagtattagatgtttaatctgccttttatccatcttttggctatcttctttggaaatgtccaacaaggc 218  Q
    |||||||| |||||||| |||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  41128640 gaaagaacttacaagtagtagatgcttaatctgtcttttatccatcttttggttatcttccttggaaatgtccaacaaggc 41128560  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 49895211 - 49895268
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| ||||||||||||| |||||||||||||||| |  |||||||||||||||    
T  49895211 gcactcctcacttcacaagccggttttgtgatgatgagttaagccccaaatttcaaca 49895268  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 1233985 - 1234041
Alignment:
Q  25 cactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    ||||||| || |||||||| | |||||||||||||||| ||||||||||||||||||    
T  1233985 cactcctcacctcacaagctggttttgtgatgatgagttagaccccaaatttcaaca 1234041  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 17412599 - 17412643
Alignment:
Q  33 acttcacaagccgattttgtgatgatgagtaagaccccaaatttc 77  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||    
T  17412599 acttcacaagccgattttgtgacgatgaattagaccccaaatttc 17412643  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 8520139 - 8520082
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| || | |||||||| |||||| | ||||||| ||||||||||||||||||    
T  8520139 gcactcctcaccttacaagccggttttgtaaagatgagttagaccccaaatttcaaca 8520082  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 17419845 - 17419902
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| || | |||||||| |||||| | ||||||| ||||||||||||||||||    
T  17419845 gcactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 17419902  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 258487 - 258544
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| ||||||||||| | |||||||||||||||| || |||||||||||||||    
T  258487 gcactcctcacttcacaagctggttttgtgatgatgagttaggccccaaatttcaaca 258544  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 6751755 - 6751699
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| || |||||||||| |||||||||||||||| || |||| ||||||||||    
T  6751755 gcactcctcacctcacaagccggttttgtgatgatgagttaggcccc-aatttcaaca 6751699  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 6813112 - 6813067
Alignment:
Q  36 tcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||||| |||||||| ||||||| || |||||||||||||||    
T  6813112 tcacaagccggttttgtgaggatgagttaggccccaaatttcaaca 6813067  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 40792846 - 40792801
Alignment:
Q  36 tcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    ||||||||||||||||| | ||||||| ||||||||||||| ||||    
T  40792846 tcacaagccgattttgtaaggatgagttagaccccaaattttaaca 40792801  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 8585146 - 8585206
Alignment:
Q  21 ggagcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    ||||||||||| || | |||||| | |||||| | ||||||| ||||||||||||||||||    
T  8585146 ggagcactcctcaccttacaagctggttttgtaaggatgagttagaccccaaatttcaaca 8585206  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 13310470 - 13310414
Alignment:
Q  25 cactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    ||||||| ||||||||| ||| |||||| | ||||||| || |||||||||||||||    
T  13310470 cactcctcacttcacaaaccggttttgtaaggatgagttaggccccaaatttcaaca 13310414  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 28910090 - 28910150
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaacagtt 84  Q
    |||||||| || | |||||||| |||||| | ||||||| || ||||||||||||||||||    
T  28910090 gcactcctcaccttacaagccggttttgtaaggatgagttagcccccaaatttcaacagtt 28910150  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 18107697 - 18107742
Alignment:
Q  36 tcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||    
T  18107697 tcacaagccggttttgtgatgatgagttagaccccaaatttcaaca 18107742  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 20720596 - 20720539
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| |||| |||||||| |||||| | ||||||| ||||||||||||| ||||    
T  20720596 gcactcctcactttacaagccggttttgtaaggatgagttagaccccaaattttaaca 20720539  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 5496619 - 5496671
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaattt 76  Q
    |||||||||||||||||||| | |||||||||||||||| ||||| |||||||    
T  5496619 gcactccttacttcacaagctggttttgtgatgatgagttagacctcaaattt 5496671  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 36037248 - 36037303
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaa 79  Q
    |||||||| || |||||||||| |||||| | ||||||| ||||||||||||||||    
T  36037248 gcactcctcacctcacaagccggttttgtaaggatgagttagaccccaaatttcaa 36037303  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 36039828 - 36039782
Alignment:
Q  36 tcacaagccgattttgtgatgatgagtaagaccccaaatttcaacag 82  Q
    |||||||||| |||||| | ||||||| |||||||||||||||||||    
T  36039828 tcacaagccggttttgtaaggatgagttagaccccaaatttcaacag 36039782  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 42604966 - 42605023
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| ||||||||| | |||||||||||||||||| || || ||||||||||||    
T  42604966 gcactcctcacttcacaaactgattttgtgatgatgagttaggcctcaaatttcaaca 42605023  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 46412106 - 46412051
Alignment:
Q  26 actccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||| || |||||||||| |||||||| ||||||| |||||| |||||||||||    
T  46412106 actcctcacctcacaagccggttttgtgacgatgagttagaccctaaatttcaaca 46412051  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 22407487 - 22407422
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaacagtttcatt 89  Q
    |||||||| || | |||||||| |||||| | ||||||| || ||||||||||||||| |||||||    
T  22407487 gcactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacaatttcatt 22407422  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 42312897 - 42312945
Alignment:
Q  33 acttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    ||||||||||||||||||||||||||| || || |||||||||| ||||    
T  42312897 acttcacaagccgattttgtgatgatgggttaggccccaaattttaaca 42312945  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 33629719 - 33629774
Alignment:
Q  26 actccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||| || |||||||||| |||||||| ||||||| || |||||||||||||||    
T  33629719 actcctcacatcacaagccggttttgtgacgatgagttaggccccaaatttcaaca 33629774  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 991262 - 991319
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| || | |||||||| |||||| | ||||||| ||||||||||||||||||    
T  991262 gcactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 991319  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 33629979 - 33630035
Alignment:
Q  24 gcactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| || ||||||||| | ||||||||||||||| || |||||||||||||||    
T  33629979 gcactcctcacatcacaagcc-agtttgtgatgatgagttaggccccaaatttcaaca 33630035  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 15102671 - 15102613
Alignment:
Q  24 gcactccttacttcacaa-gccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||||||| ||||||||| |||| |||||| | ||||||| ||||||||||||||||||    
T  15102671 gcactcctcacttcacaaagccggttttgtaaggatgagttagaccccaaatttcaaca 15102613  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 16590246 - 16590299
Alignment:
Q  28 tccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||| |||| |||||||| |||||| | ||||||| ||||||||||||||||||    
T  16590246 tcctcactttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 16590299  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 16605134 - 16605081
Alignment:
Q  28 tccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaaca 81  Q
    |||| |||| |||||||| |||||| | ||||||| ||||||||||||||||||    
T  16605134 tcctcactttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 16605081  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 5424827 - 5424770
Alignment:
Q  25 cactccttacttcacaagccgattttgtgatgatgagtaagaccccaaatttcaacag 82  Q
    ||||||| || | |||||||| |||||| | ||||||| |||||||||||||||||||    
T  5424827 cactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaacag 5424770  T

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