View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21222_low_4 (Length: 488)

Name: NF21222_low_4
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21222_low_4
NF21222_low_4
[»] chr7 (3 HSPs)
chr7 (13-306)||(47025049-47025346)
chr7 (374-463)||(47024892-47024981)
chr7 (425-463)||(36791200-36791238)
[»] chr5 (4 HSPs)
chr5 (373-456)||(17095456-17095541)
chr5 (373-463)||(43585354-43585446)
chr5 (373-446)||(3955970-3956047)
chr5 (373-453)||(10237006-10237088)
[»] chr4 (2 HSPs)
chr4 (377-463)||(49535674-49535762)
chr4 (373-463)||(13136662-13136754)
[»] chr6 (3 HSPs)
chr6 (373-456)||(13278643-13278728)
chr6 (373-453)||(12338316-12338398)
chr6 (373-463)||(15494421-15494513)
[»] chr3 (4 HSPs)
chr3 (373-456)||(47042807-47042891)
chr3 (373-461)||(33440533-33440623)
chr3 (373-463)||(16142838-16142930)
chr3 (373-442)||(43899034-43899105)
[»] chr1 (2 HSPs)
chr1 (373-449)||(9862092-9862170)
chr1 (373-453)||(51879188-51879270)
[»] chr2 (2 HSPs)
chr2 (373-463)||(13510980-13511072)
chr2 (373-463)||(6606399-6606491)
[»] scaffold0338 (1 HSPs)
scaffold0338 (375-463)||(18221-18311)
[»] chr8 (4 HSPs)
chr8 (373-464)||(33384741-33384834)
chr8 (376-441)||(3462691-3462758)
chr8 (373-453)||(30412973-30413055)
chr8 (376-449)||(44541916-44541991)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 47025346 - 47025049
Alignment:
Q  13 aatatggtttggtttggctgcttggtgtt-gggttttggtgtgagagcttcatagtttatgtacctcatcttttctactcaatatgtggcttttaacatt 111  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47025346 aatatggtttggtttggctgcttggtgtttgggttttggtgtgagagcttcatagtttatgtacctcatcttttctactcaatatgtggcttttaacatt 47025247  T
Q  112 atacttggttactaaagtaagaacacaacaacgataaggtttggttgctatgccttgggttctaagttaagttgaggtacaatttatgcgataatacaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47025246 atacttggttactaaagtaagaacacaacaacgataaggtttggttgctatgccttgggttctaagttaagttgaggtacaatttatgcgataatacaaa 47025147  T
Q  212 gttatacgggttaatcaagattgcccaacccatatgcctttacaca---aacacacatgaccagcttaagggccaagccacccaagcaagagttttag 306  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  47025146 gttatacgggttaaccaagattgctcaacccatatgcctttacacaaacaacacacatgaccagcttaagggtcaagccacccaagcaagaattttag 47025049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 463
Target Start/End: Complemental strand, 47024981 - 47024892
Alignment:
Q  374 tcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaaacttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||  ||||||||||||||||||||||| |||||| ||||||||||||    
T  47024981 tcaattttaaggtctcaaatccatttgatcataaattcaaatttttttttcaaaaacttgatttattatgtttttaacaaacactgtgtt 47024892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 463
Target Start/End: Complemental strand, 36791238 - 36791200
Alignment:
Q  425 aaaaacttgatttattatgcttttaataaacactgtgtt 463  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  36791238 aaaaacttgatttattgtgcttttaataaacaatgtgtt 36791200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 17095541 - 17095456
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgcttttaataaaca 456  Q
    ||||||||||| | ||||||||| ||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  17095541 gtcaattttaaagcctcaaatccttttggtcctaagttcaaatcttagattcaacaaaacttgatttattatgcttttaataaaca 17095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 463
Target Start/End: Complemental strand, 43585446 - 43585354
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaa--acttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||| | ||||||||| ||||||| ||| ||||||| ||   |||||||  ||||||||||||||||||||||||| || ||||||    
T  43585446 gtcaattttaatgcctcaaatccttttggtcttaagttcaaattttgaattcaaaagaacttgatttattatgcttttaataagcattgtgtt 43585354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 3956047 - 3955970
Alignment:
Q  373 gtcaattttaaggtctcaaat--ccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgctt 446  Q
    ||||||||||||| |||||||  || ||||||||||| |||||||||| | ||||  |||| ||||||||||||||||    
T  3956047 gtcaattttaaggcctcaaatatccttttggtcctaacttcaaatcttggattcaacaaaaattgatttattatgctt 3955970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 453
Target Start/End: Complemental strand, 10237088 - 10237006
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaa--aaacttgatttattatgcttttaataa 453  Q
    |||||||||||||  |||||| | ||||| |  || |||||||||||| |||||  ||| |||||||||||||||||||||||    
T  10237088 gtcaattttaaggcatcaaatacttttggactaaagttcaaatcttagattcaacaaaatttgatttattatgcttttaataa 10237006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 463
Target Start/End: Complemental strand, 49535762 - 49535674
Alignment:
Q  377 attttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaa--aaacttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||| ||||||||| ||||||||||| ||||||| || | |||||  |||||||||||||||||||||||||||||| ||||||    
T  49535762 attttaaggcctcaaatccttttggtcctaagttcaaattttggattcaacaaaacttgatttattatgcttttaataaacattgtgtt 49535674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 13136662 - 13136754
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaa--acttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||||| ||||||||| ||| ||| ||| ||||||| ||   |||||||  ||||||||| ||||||||||||||| || ||||||    
T  13136662 gtcaattttaaggcctcaaatccttttagtcttaagttcaaatattgaattcaaaagaacttgatttcttatgcttttaataagcattgtgtt 13136754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 13278728 - 13278643
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgcttttaataaaca 456  Q
    ||||||||||||| ||||||||| ||||||||||| || ||||||| | ||||  |||||||||||||||||| |||| |||||||    
T  13278728 gtcaattttaaggcctcaaatccttttggtcctaagtttaaatcttgggttcaacaaaacttgatttattatgtttttgataaaca 13278643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 453
Target Start/End: Original strand, 12338316 - 12338398
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgcttttaataa 453  Q
    ||||||||||||| ||||||||| || |||||||| |||||||| | | ||||  ||||||| |||||||||||| |||||||    
T  12338316 gtcaattttaaggcctcaaatcctttcggtcctaagttcaaatcatggattcaataaaactttatttattatgctattaataa 12338398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 15494421 - 15494513
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||||| ||||||| | ||||  || || |||||||||||| ||||  |||| || |||||||||| ||||||||| || ||||||    
T  15494421 gtcaattttaaggcctcaaattcttttgcaccaaagttcaaatcttagattcaacaaaatttaatttattatgtttttaataagcaatgtgtt 15494513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 456
Target Start/End: Original strand, 47042807 - 47042891
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca-aaaacttgatttattatgcttttaataaaca 456  Q
    ||||||||||||||||||||||  ||||||| ||| ||||||||||| ||  | |||||| ||||||| ||||||||||||||||    
T  47042807 gtcaattttaaggtctcaaatcattttggtcttaagttcaaatcttaattcaacaaaactcgatttatcatgcttttaataaaca 47042891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 33440623 - 33440533
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatctt-agtttca-aaaacttgatttattatgcttttaataaacactgtg 461  Q
    ||||| ||||||| ||||||||| |||||| |||| |||||||||| | ||| | ||||| |||||||||||||||||||||| |||||||    
T  33440623 gtcaaatttaaggcctcaaatccttttggttctaagttcaaatcttgaatttaacaaaacgtgatttattatgcttttaataagcactgtg 33440533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 463
Target Start/End: Complemental strand, 16142930 - 16142838
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaa--aaacttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||||| ||| ||||| |||  || ||| |||||||||| | |||||  ||||||||||||||||||||||| ||| || ||||||    
T  16142930 gtcaattttaaggcctcgaatccttttaatcgtaagttcaaatcttggattcaacaaaacttgatttattatgcttttactaagcattgtgtt 16142838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 43899034 - 43899105
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattat 442  Q
    |||||||||||||  |||||| | ||||||| ||| |||||||||| | ||||  |||||||||||||||||    
T  43899034 gtcaattttaaggcttcaaattcttttggtcttaagttcaaatctttgattcaacaaaacttgatttattat 43899105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 9862092 - 9862170
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttc--aaaaacttgatttattatgctttta 449  Q
    ||||||||||| | ||||||||| |||||| |||| |||||||||| | |||  |||||||||||||||||||||||||    
T  9862092 gtcaattttaaagcctcaaatccttttggttctaagttcaaatcttggattcaaaaaaacttgatttattatgctttta 9862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 453
Target Start/End: Original strand, 51879188 - 51879270
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaa--acttgatttattatgcttttaataa 453  Q
    |||||||||||   ||||||||| ||||||| ||| ||||||| ||   |||||||  |||||||||||||||||||||||||    
T  51879188 gtcaattttaacacctcaaatccttttggtcttaagttcaaatattgaattcaaaagaacttgatttattatgcttttaataa 51879270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 463
Target Start/End: Complemental strand, 13511072 - 13510980
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaa--acttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||| | ||||||||| ||||||| ||| ||||||| ||   |||||||  ||||||||||||||||||||||||| || ||||||    
T  13511072 gtcaattttaacgcctcaaatccttttggtcttaagttcaaatattgaattcaaaagaacttgatttattatgcttttaataagcattgtgtt 13510980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 6606399 - 6606491
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaa--acttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||| | || |||||| ||||||| ||| ||||||| ||   |||||||  |||||||||||||||||||||| || || ||||||    
T  6606399 gtcaattttaacgcctaaaatccttttggtcttaagttcaaatattgaattcaaaagaacttgatttattatgcttttaacaagcattgtgtt 6606491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 463
Target Start/End: Complemental strand, 18311 - 18221
Alignment:
Q  375 caattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgcttttaataaacactgtgtt 463  Q
    ||||||||||| || ||| || ||||||||||| |||||||||| | ||||  |||| ||||||||||||||||||| ||| || ||||||    
T  18311 caattttaaggccttaaaaccttttggtcctaagttcaaatcttggattcaacaaaatttgatttattatgcttttagtaagcattgtgtt 18221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 464
Target Start/End: Original strand, 33384741 - 33384834
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttcaaaaactt--gatttattatgcttttaataaacactgtgttt 464  Q
    |||||||||||||  |||||| | ||||| || || |||||||||||| ||||| || ||  |||||||||||||||||| || ||||||||||    
T  33384741 gtcaattttaaggcttcaaattcttttggaccaaagttcaaatcttagattcaacaaattttgatttattatgcttttaacaagcactgtgttt 33384834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 441
Target Start/End: Complemental strand, 3462758 - 3462691
Alignment:
Q  376 aattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttatta 441  Q
    |||||||| | ||||||||| ||||||||||| |||||||||| | ||||  ||||||||||||||||    
T  3462758 aattttaaagcctcaaatccttttggtcctaagttcaaatcttggattcaacaaaacttgatttatta 3462691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 453
Target Start/End: Original strand, 30412973 - 30413055
Alignment:
Q  373 gtcaattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgcttttaataa 453  Q
    |||||||||||| |||||||||| ||| |||||||  |||||| || | ||||  |||| |||||||||||||||||| ||||    
T  30412973 gtcaattttaagctctcaaatccttttagtcctaaggtcaaattttggattcaacaaaatttgatttattatgctttttataa 30413055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 44541916 - 44541991
Alignment:
Q  376 aattttaaggtctcaaatccatttggtcctaaattcaaatcttagtttca--aaaacttgatttattatgctttta 449  Q
    ||||||||||| | |||||| ||||| || | ||||||||||||  ||||  |||| |||||||||||||||||||    
T  44541916 aattttaaggttttaaatccttttggaccaacattcaaatcttaaattcaacaaaatttgatttattatgctttta 44541991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University