View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21222_low_9 (Length: 330)
Name: NF21222_low_9
Description: NF21222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21222_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 41126820 - 41126518
Alignment:
| Q |
12 |
gcataggaaacaacattgtttttgctcaatctcctttccttggcttccttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126820 |
gcataggaaacaacattgtttttgctcaatctcctttccttggcttccttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaact |
41126721 |
T |
|
| Q |
112 |
tcaacaattcctcccatcgtttacggaataaaatccgagtcactttgggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126720 |
tcaacaattcctcccatcgtttacggaataaaatccgagtcactttgggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttg |
41126621 |
T |
|
| Q |
212 |
tacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatattgaaggtggtcaacaact |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41126620 |
tacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatattgaaggtggtcaacaact |
41126521 |
T |
|
| Q |
312 |
ttg |
314 |
Q |
| |
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||| |
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| T |
41126520 |
ttg |
41126518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 292
Target Start/End: Complemental strand, 2350767 - 2350534
Alignment:
| Q |
59 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttg |
158 |
Q |
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|||||||||||| || |||||||| | ||||||||||||||| ||||| ||||||||||| || ||||||||||| | || ||||||||||| ||||| |
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| T |
2350767 |
cttcctcgctctaatcagcggaagcaaaacatcttcttgatcctttcgtaacttcaacaactcttcccatcgtttgcaaaacaaaatccgagtaactttt |
2350668 |
T |
|
| Q |
159 |
ggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaa |
258 |
Q |
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|| ||| ||| | || ||||||||||| | || | ||||| || |||||||||| | || || || |||||||| ||||||||||||| |||||||| |
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| T |
2350667 |
ggccagaaatttattatattgaatttgttaacactcaacagaattgtcctttgtacacgctcaatatcactgattttctcatcattaactctttcaccaa |
2350568 |
T |
|
| Q |
259 |
aacacataaaaacgagtaagcaaaacattgcata |
292 |
Q |
| |
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||||||| ||||| ||||| || ||||| ||||| |
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| T |
2350567 |
aacacatgaaaacaagtaaacagaacatagcata |
2350534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 283
Target Start/End: Complemental strand, 2330461 - 2330237
Alignment:
| Q |
59 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttg |
158 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| || ||||||| || ||||| |
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| T |
2330461 |
cttcctcgctcttatcagcggaagcagaacatcttcttgatctttaagcaacttcgccaactcatcccatcgtttacgcaacaaaatccttgtaactttc |
2330362 |
T |
|
| Q |
159 |
ggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaa |
258 |
Q |
| |
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|| ||| ||||| || || ||| || | | | | ||||| | |||||||||| | || || ||| | ||||| ||||| ||||||| |||||||| |
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| T |
2330361 |
ggccagaaattcagtatattaaatctgctaaaattcaacagaatcgtcctttgtacacgctcaatatcgttaattttctcatcgttaactctttcaccaa |
2330262 |
T |
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| Q |
259 |
aacacataaaaacgagtaagcaaaa |
283 |
Q |
| |
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||||||||||||| ||||| ||||| |
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| T |
2330261 |
aacacataaaaacaagtaaacaaaa |
2330237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 292
Target Start/End: Complemental strand, 2303190 - 2302958
Alignment:
| Q |
60 |
ttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttgg |
159 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| || | |||||||| || |||| |||||| ||||| || ||||||| || ||||| | |
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| T |
2303190 |
ttcctcgctcttatcagcggaagtagaacatcctcttgatccttaagtaacttcaaaaactccttccatcggttacgcaacaaaatccttgtaactttcg |
2303091 |
T |
|
| Q |
160 |
gaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaa |
259 |
Q |
| |
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| ||| ||||| || |||||| || || | || || || || | |||| ||| | || || || ||||| || ||||| ||||||| ||||||||| |
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| T |
2303090 |
gccagaaattcagtatattgaatctgccgatatttaacataattgtcatttgcacacgctcaatatcactgatattctcatcgttaactctttcaccaaa |
2302991 |
T |
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| Q |
260 |
acacataaaaacgagtaagcaaaacattgcata |
292 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||| |
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| T |
2302990 |
acacataaaaacaagtaagctaaacatagcata |
2302958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 2326746 - 2326658
Alignment:
| Q |
59 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatcc |
147 |
Q |
| |
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||||||| ||||||| |||||||| | |||||||||||||||| | |||||| ||||||||||||||||| ||||||| || ||||||| |
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| T |
2326746 |
cttcctccctcttatcagcggaagcaaaacatcttcttgatctctacgcaacatcaacaattcctcccattgtttacgcaacaaaatcc |
2326658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 283
Target Start/End: Complemental strand, 2320892 - 2320668
Alignment:
| Q |
59 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaatccgagtcactttg |
158 |
Q |
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|||||| |||||||| |||||||| |||||||| |||||||| || | |||||||| || ||||||||||| ||||| || ||||||| || |||| |
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| T |
2320892 |
cttccttgctcttatcagcggaagcagaacatcctcttgatccttaagtaacttcaaaaactcctcccatcggttacgcaacaaaatccttgtacctttc |
2320793 |
T |
|
| Q |
159 |
ggaaagatattcaaaatgttgaatttgttgagacctatcagaagtgccctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaa |
258 |
Q |
| |
|
|| | | ||||| || |||||| || | | | | ||||| || |||||||||| | || || || |||||||| ||||| ||||||| |||||||| |
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| T |
2320792 |
ggccaaaaattcagtatattgaatctgctaatattcaacagaattgtcctttgtacacgctcaatatcactgattttctcatcgttaactctttcaccaa |
2320693 |
T |
|
| Q |
259 |
aacacataaaaacgagtaagcaaaa |
283 |
Q |
| |
|
||||||||||||| ||||| ||||| |
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|
| T |
2320692 |
aacacataaaaacaagtaaacaaaa |
2320668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 2293431 - 2293343
Alignment:
| Q |
206 |
cctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatatt |
294 |
Q |
| |
|
|||||||||| | || || || |||||||| ||||| ||||||| ||||||||||||||||||||| ||||| | ||||| ||||||| |
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| T |
2293431 |
cctttgtacacgctcaatatcactgattttctcatcgttaactctttcaccaaaacacataaaaacaagtaaagagaacatagcatatt |
2293343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 2309762 - 2309674
Alignment:
| Q |
206 |
cctttgtacaagttcgatgtcgctgattttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatatt |
294 |
Q |
| |
|
|||||||||| | || || || |||||||| ||||| ||||||| ||||||||||||||||||||| ||||| | ||||| ||||||| |
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|
| T |
2309762 |
cctttgtacacgctcaatatcactgattttctcatcgttaactctttcaccaaaacacataaaaacaagtaaagagaacatagcatatt |
2309674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 2326574 - 2326508
Alignment:
| Q |
231 |
attttatcatcattaactcgttcaccaaaacacataaaaacgagtaagcaaaacattgcatattgaa |
297 |
Q |
| |
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||||| ||||| ||||||| ||||||||||||||||||||| ||||| || ||||| ||||| |||| |
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|
| T |
2326574 |
attttttcatcgttaactctttcaccaaaacacataaaaacaagtaaacagaacatagcataatgaa |
2326508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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