View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21223_high_1 (Length: 330)
Name: NF21223_high_1
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21223_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 33333172 - 33332856
Alignment:
| Q |
11 |
agaatatttcaacccatttatttagtctaaagccgtagagtgagataatttaataattttaagtataacaaagcaatagaccctttcaaaacctctttaa |
110 |
Q |
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| T |
33333172 |
agaatatttcaacccatttatttagtctaaagccatagagtttgataatttaataattttaagtataacaaagcaatagaccctttcaaaacctctttaa |
33333073 |
T |
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| Q |
111 |
aaagatagaaactttcaaaacccatttgtttattgcaatgtcattactagctataaactttaaaagtgtatttgattcccaaaacaggaagtattatata |
210 |
Q |
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| T |
33333072 |
aaagatagaaactttcaaaacccatttgtttattgcaatgtcattactagctatgaactttaaaagtgtgtttgattcccaaaacaggaagtattatata |
33332973 |
T |
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| Q |
211 |
taatagtatatgatagaactatactcgagagatagagagataacatcttttatattggagggataatggatcttttcaatataatattatattggaaagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
33332972 |
taatagtatatgatagaactatactcgagagatagagagataacatcttttatattggagggataatggatctttccaatataacattatattgggtagt |
33332873 |
T |
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| Q |
311 |
atgggatatatagttac |
327 |
Q |
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|| |||||||||||||| |
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| T |
33332872 |
ataggatatatagttac |
33332856 |
T |
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