View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21223_high_10 (Length: 215)
Name: NF21223_high_10
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21223_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 23466417 - 23466228
Alignment:
| Q |
18 |
atggaatgtggtggtgttgatgagagggaggtgattaaattggtttatgtagctttatggtgtgtgcaagagaagccaaggttgaggcctagtatggcta |
117 |
Q |
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| T |
23466417 |
atggaatgtggtggtgttgatgagagggaggtgattaaattggtttatgttgctttatggtgtgtgcaagagaagccaaggttgaggcctagtatggcta |
23466318 |
T |
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| Q |
118 |
gagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgattttctcagtgttgatgatg |
207 |
Q |
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| T |
23466317 |
gagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgattttctcagtgttgatgatg |
23466228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 46790038 - 46790159
Alignment:
| Q |
69 |
gctttatggtgtgtgcaagagaagccaaggttgaggcctagtatggctagagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggta |
168 |
Q |
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| T |
46790038 |
gctttgtggtgtatacaagagaagccaaggttgaggcctagtatggttgaagttgttgacatgcttgaaggacgtgtgagagtggaggagccaccaggga |
46790137 |
T |
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| Q |
169 |
caagaatgattcttgttgattt |
190 |
Q |
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| T |
46790138 |
ctagaatgattcttgttgattt |
46790159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 38820067 - 38820017
Alignment:
| Q |
22 |
aatgtggtggtgttgatgagagggaggtgattaaattggtttatgtagctt |
72 |
Q |
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| T |
38820067 |
aatgtggaggtgttgctgatagggaggtgattaaattggtttatgttgctt |
38820017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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