View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21223_high_2 (Length: 329)
Name: NF21223_high_2
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21223_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 44976089 - 44975782
Alignment:
| Q |
17 |
aggtaggttcacaaatgaataagattagtaagtactgtgtaccttttcattataatgcatgtctatcgtagattcattcatatagtgataaaatatgaga |
116 |
Q |
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| T |
44976089 |
aggtaggttcacaaatgaataagattagtaagtactgtgtaccttttcattataatgcatttctatcgtagattcattcatatagtgataaaatatgaga |
44975990 |
T |
|
| Q |
117 |
cgtcgtagtcttaagtactgcttatccacttgtatctcaagaaaatgaaatatcccataataataccaaatcatccaaaacaacatatattccaaataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975989 |
cgtcgtagtcttaagtactgcttatccacttgtatctcaagaaaatgaaatatcccataataataccaaatcatccaaaacaacatatattccaaataaa |
44975890 |
T |
|
| Q |
217 |
gaattaatgagatttaacatcacaaccaaagaggagagaagaaagagtcaactttctcactttgaaacaaactt--tgtttgtggctgcatgcgtgtatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||| |||||| |
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| T |
44975889 |
gaattaatgagatttaacatcacaaccaaagaggagagaagaaagagtcaactttctaactttgaaacaaactttatgtttatggccgcatgcatgtatt |
44975790 |
T |
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| Q |
315 |
tcatatca |
322 |
Q |
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||| |||| |
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| T |
44975789 |
tcagatca |
44975782 |
T |
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