View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21223_high_4 (Length: 274)
Name: NF21223_high_4
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21223_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 44975538 - 44975800
Alignment:
| Q |
12 |
agagagggctccatgagggacagagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975538 |
agagagggctccatgagggacagagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaag |
44975637 |
T |
|
| Q |
112 |
ggtttcaagatccaaaacttgaaggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975638 |
ggtttcaagatccaaaacttgaaggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggtt |
44975737 |
T |
|
| Q |
212 |
ttgttatttcatttgattttctataaagtgtataaatatcatcatgatctgaaatacatgcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44975738 |
ttgttatttcatttgattttctataaagtgtataaatatcatcatgatctgaaatacatgcat |
44975800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University