View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21223_low_1 (Length: 385)

Name: NF21223_low_1
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21223_low_1
NF21223_low_1
[»] chr7 (12 HSPs)
chr7 (13-370)||(4863326-4863683)
chr7 (17-278)||(4697610-4697865)
chr7 (17-134)||(4846579-4846696)
chr7 (13-133)||(4784394-4784514)
chr7 (13-133)||(4816823-4816943)
chr7 (18-125)||(4661246-4661353)
chr7 (18-125)||(4666377-4666484)
chr7 (17-133)||(4712625-4712741)
chr7 (18-125)||(4643146-4643253)
chr7 (18-123)||(4630351-4630456)
chr7 (18-123)||(4652962-4653067)
chr7 (71-134)||(4636352-4636415)
[»] chr4 (1 HSPs)
chr4 (18-135)||(18926296-18926413)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 4863326 - 4863683
Alignment:
Q  13 aatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863326 aatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatag 4863425  T
Q  113 cggcacaaatgggatggtaaagacgatgaaacttcgccttctttcttttttgtccatgagctttcatccatttcttcaacatgagattcaaatcttcttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863426 cggcacaaatgggatggtaaagacgatgaaacttcgccttctttcttttttgtccatgagctttcatccatttcttcaacatgagattcaaatcttcttc 4863525  T
Q  213 ttcttctaacaaaaactatcactccaataacagatgctagcataagacatgaaactacaacaacaacgacgataactatggttgatttcttcgactgctc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863526 ttcttctaacaaaaactatcactccaataacagatgctagcataagacatgaaactacaacaacaacgacgataactatggttgatttcttcgactgctc 4863625  T
Q  313 agttggtaaaccttgttctgtgggagataggataaagggttttggattcagtccaaag 370  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4863626 agttggtaaaccttgttctgtgggagatagaataaagggttttggattcagtccaaag 4863683  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 4697865 - 4697610
Alignment:
Q  17 taacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggc 116  Q
    ||||||||| ||||||| || |||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| | |||||||||||||||||    
T  4697865 taacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggc 4697766  T
Q  117 acaaatgggatggtaaagacgatgaaacttcgccttctttcttttttgtccatgagctttcatccatttcttcaacatgagattcaaatcttcttcttct 216  Q
    ||||||||||||||||||  || |||      ||||||||  || |  ||||||| ||||| |||||   ||||| ||||||||||| ||||||||| ||    
T  4697765 acaaatgggatggtaaagttgacgaa------ccttcttttcttgtcctccatgaactttcttccat---ttcaatatgagattcaagtcttcttctcct 4697675  T
Q  217 tctaacaaaaactatcactc---caataacagatgctagcataagacatgaaactacaacaacaa 278  Q
    |||| || ||||||| | ||   ||| |||| |||||||||  ||||||||||||||||||||||    
T  4697674 tctagcataaactatgattcccacaacaacaaatgctagcaagagacatgaaactacaacaacaa 4697610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 4846696 - 4846579
Alignment:
Q  17 taacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggc 116  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||  |||||||||| | |||||||||||||||||    
T  4846696 taacctttgtacacgttgccgaaccctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggc 4846597  T
Q  117 acaaatgggatggtaaag 134  Q
    |||||||||| |||||||    
T  4846596 acaaatgggacggtaaag 4846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 4784514 - 4784394
Alignment:
Q  13 aatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatag 112  Q
    |||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||||| ||| |||| || | |||||||||||||    
T  4784514 aatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatag 4784415  T
Q  113 cggcacaaatgggatggtaaa 133  Q
    |||||||||||||||||||||    
T  4784414 cggcacaaatgggatggtaaa 4784394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 4816943 - 4816823
Alignment:
Q  13 aatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatag 112  Q
    |||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||||| ||| |||| || | |||||||||||||    
T  4816943 aatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatag 4816844  T
Q  113 cggcacaaatgggatggtaaa 133  Q
    |||||||||||||||||||||    
T  4816843 cggcacaaatgggatggtaaa 4816823  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 4661246 - 4661353
Alignment:
Q  18 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||| ||||| || ||||| |||||||  |||||||| ||||||||    
T  4661246 aacctttgtacacgttgccaaaccctccaactccaatgatgaaatcatcatcaaagttttttgtggctgctctgatctctgcaattgtaaagtagcggca 4661345  T
Q  118 caaatggg 125  Q
    ||||||||    
T  4661346 caaatggg 4661353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 4666377 - 4666484
Alignment:
Q  18 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 117  Q
    ||||||||||||||||||| |||||||||||||| |||||||||  |||||||||||||||||| || ||||| |||||||  ||||||||  | |||||    
T  4666377 aacctttgtacacgttgccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggca 4666476  T
Q  118 caaatggg 125  Q
    ||||||||    
T  4666477 caaatggg 4666484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 4712741 - 4712625
Alignment:
Q  17 taacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggc 116  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||||||||| |||||||| ||   ||| |||||| | || |    
T  4712741 taacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgac 4712642  T
Q  117 acaaatgggatggtaaa 133  Q
    |||||||||||||||||    
T  4712641 acaaatgggatggtaaa 4712625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 4643146 - 4643253
Alignment:
Q  18 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 117  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||  ||| || |||||||||||||| ||| | |||||||  ||||||||  |||||||    
T  4643146 aacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggca 4643245  T
Q  118 caaatggg 125  Q
    || |||||    
T  4643246 cagatggg 4643253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 4630351 - 4630456
Alignment:
Q  18 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 117  Q
    |||||||||||||||| || |||||||||| ||| |||||||||  || ||||||||||||||| || ||| | ||||| |  |||||||| ||||| ||    
T  4630351 aacctttgtacacgttcccaaaccctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgaca 4630450  T
Q  118 caaatg 123  Q
    ||||||    
T  4630451 caaatg 4630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 4652962 - 4653067
Alignment:
Q  18 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 117  Q
    ||||||||||||||||||| || |||||||| || |||||||||| ||| || ||||| ||||| || ||| | |||||||  ||||| ||  |||| ||    
T  4652962 aacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgaca 4653061  T
Q  118 caaatg 123  Q
    ||||||    
T  4653062 caaatg 4653067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 4636352 - 4636415
Alignment:
Q  71 aagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaag 134  Q
    ||||| ||||| || ||||| |||||||  |||||||| ||||||||||||| |||||||||||    
T  4636352 aagttttttgtggctgctctgatctctgcgattgtaaagtagcggcacaaataggatggtaaag 4636415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 18926413 - 18926296
Alignment:
Q  18 aacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggca 117  Q
    ||||||| ||||||||||| |||||||||||||| ||||| |||  ||| |||||||| ||||| || ||| |||||||||  |||||||| ||||||||    
T  18926413 aacctttatacacgttgccaaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgtaaagtagcggca 18926314  T
Q  118 caaatgggatggtaaaga 135  Q
    ||||||||  ||||||||    
T  18926313 caaatggggcggtaaaga 18926296  T

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