View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21223_low_4 (Length: 298)
Name: NF21223_low_4
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21223_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 23466668 - 23466411
Alignment:
| Q |
20 |
aagcggtgtctacaataagaggaacacgaggttatatggcacctgaatggcttttagaaaagggtatttcagataaaactgatgtatatagttacgggat |
119 |
Q |
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| T |
23466668 |
aagcggtgtctacaataagaggaacaagaggttatatggcaccagaatggcttttagaaaagggtatttcagataaaactgatgtatatagttacgggat |
23466569 |
T |
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| Q |
120 |
ggttttattagagattgttggaggaagaaaaaatgtgtgcttggttgaagacgaaacggacaagtcaaaaaggaaatggcaatattttccgaagattgta |
219 |
Q |
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| T |
23466568 |
ggttttattagagattgttggaggaagaaaaaatgtgtgtttggttgaagacgaaaaggacaagtcaaaaaggaaatggcaatattttccgaagattgta |
23466469 |
T |
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| Q |
220 |
aacgagaaagtgaaacaagggaaaatcatggaaatttttgatcagaggttaatggaat |
277 |
Q |
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| T |
23466468 |
aacgagaaagtgaaacaagggaaaatcatggaaattgttgatcataggttaatggaat |
23466411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 38820208 - 38820079
Alignment:
| Q |
133 |
attgttggaggaagaaaaaatgtgtgcttggttgaagacgaaacggacaagtcaaaaaggaaatggcaatattttccgaagattgtaaacgagaaagtga |
232 |
Q |
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|||| ||||||||||||| | ||||| |||| |||||| |||| |||||| |||| |||||||||| |||||||| |||||||| || |||||||||| |
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| T |
38820208 |
attgatggaggaagaaaacaagtgtgtttggctgaagatgaaaaggacaacataaaatggaaatggcagtattttcctaagattgttaatgagaaagtga |
38820109 |
T |
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| Q |
233 |
aacaagggaaaatcatggaaatttttgatca |
263 |
Q |
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| T |
38820108 |
aacaagggaaaa-catggaagttgttgatca |
38820079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 47193735 - 47193771
Alignment:
| Q |
33 |
aataagaggaacacgaggttatatggcacctgaatgg |
69 |
Q |
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| T |
47193735 |
aataagagggacaagaggttatatggcacctgaatgg |
47193771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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