View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21223_low_8 (Length: 226)
Name: NF21223_low_8
Description: NF21223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21223_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 52949188 - 52949406
Alignment:
| Q |
7 |
aaatgagtcactcgaaagtgaacaagccttgttttaatgtgatctcaacttcgaaactgtattcaaaatcttcattacatatacgcgtttagcatgagta |
106 |
Q |
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| T |
52949188 |
aaatgagtcactcgaaagtgaacaagccttgttttaatgtgatctcaacttcgaaactgtattcaaaatcttcattacatatacgcgtttagcatgagta |
52949287 |
T |
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| Q |
107 |
ttcaaatgatgagaaagggnnnnnnngaaaattcattgtattatatctaaagtttatgttaagggtcttgggacacactcacagatacttaaatttccta |
206 |
Q |
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| T |
52949288 |
ttcaaaagatgagaaaggg-aaaaaagaaaattcattgcattatatctaaagtttatgttaagggtcttggggcacactcacagatacttaaatttccta |
52949386 |
T |
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| Q |
207 |
ccaacctacataatgatgaa |
226 |
Q |
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| T |
52949387 |
ccaacctacataatgatgaa |
52949406 |
T |
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