View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21224_high_10 (Length: 309)

Name: NF21224_high_10
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21224_high_10
NF21224_high_10
[»] chr3 (18 HSPs)
chr3 (12-292)||(51666997-51667277)
chr3 (203-273)||(40339279-40339349)
chr3 (210-279)||(35264367-35264436)
chr3 (226-293)||(3776598-3776665)
chr3 (206-293)||(37334976-37335063)
chr3 (227-280)||(41591308-41591361)
chr3 (210-281)||(25129493-25129564)
chr3 (226-293)||(32112070-32112137)
chr3 (226-277)||(41596107-41596158)
chr3 (210-269)||(46853500-46853559)
chr3 (210-264)||(27266765-27266819)
chr3 (213-274)||(30958099-30958161)
chr3 (213-274)||(30973911-30973973)
chr3 (89-130)||(21007763-21007804)
chr3 (245-293)||(7012679-7012727)
chr3 (245-293)||(10852727-10852775)
chr3 (214-274)||(48411115-48411175)
chr3 (229-293)||(49526683-49526747)
[»] chr2 (16 HSPs)
chr2 (210-292)||(15220804-15220886)
chr2 (193-284)||(4908833-4908924)
chr2 (210-267)||(44439314-44439371)
chr2 (229-293)||(3853932-3853996)
chr2 (210-277)||(1976822-1976889)
chr2 (203-293)||(10918609-10918699)
chr2 (210-274)||(28206737-28206801)
chr2 (161-267)||(4119395-4119501)
chr2 (210-280)||(4894112-4894182)
chr2 (161-259)||(11510965-11511062)
chr2 (210-264)||(16518838-16518892)
chr2 (89-130)||(36374238-36374279)
chr2 (245-293)||(8843061-8843109)
chr2 (245-293)||(23359942-23359990)
chr2 (210-262)||(33019129-33019181)
chr2 (212-256)||(40401622-40401666)
[»] chr1 (18 HSPs)
chr1 (115-269)||(18325074-18325228)
chr1 (203-293)||(5268272-5268362)
chr1 (216-269)||(213247-213300)
chr1 (210-265)||(34875059-34875114)
chr1 (211-278)||(48548971-48549038)
chr1 (206-263)||(45557362-45557415)
chr1 (210-293)||(7524173-7524256)
chr1 (210-269)||(28464961-28465020)
chr1 (59-145)||(15478108-15478194)
chr1 (207-269)||(48635158-48635219)
chr1 (144-185)||(6744748-6744789)
chr1 (245-290)||(29988400-29988445)
chr1 (218-293)||(3016230-3016303)
chr1 (245-293)||(4347037-4347085)
chr1 (245-293)||(7765298-7765346)
chr1 (210-269)||(24587972-24588032)
chr1 (245-293)||(29759714-29759762)
chr1 (229-281)||(31362749-31362801)
[»] chr7 (15 HSPs)
chr7 (214-279)||(40561714-40561779)
chr7 (147-293)||(21435940-21436087)
chr7 (210-293)||(38123608-38123691)
chr7 (219-293)||(12306792-12306866)
chr7 (210-280)||(44570695-44570765)
chr7 (220-293)||(45557435-45557508)
chr7 (226-293)||(40491654-40491721)
chr7 (212-282)||(46344571-46344641)
chr7 (89-159)||(48158813-48158883)
chr7 (236-293)||(29829311-29829368)
chr7 (89-154)||(45004907-45004972)
chr7 (245-293)||(4228607-4228655)
chr7 (203-267)||(7276009-7276073)
chr7 (86-154)||(45369081-45369149)
chr7 (90-154)||(48253089-48253153)
[»] chr4 (14 HSPs)
chr4 (209-293)||(33843770-33843854)
chr4 (210-293)||(22250286-22250369)
chr4 (210-269)||(27096564-27096623)
chr4 (210-264)||(8604593-8604647)
chr4 (204-274)||(17898089-17898159)
chr4 (210-280)||(55927725-55927795)
chr4 (245-293)||(36150628-36150676)
chr4 (210-261)||(21691186-21691237)
chr4 (118-224)||(28178856-28178962)
chr4 (210-263)||(4451518-4451571)
chr4 (210-263)||(36639855-36639908)
chr4 (253-293)||(11302498-11302538)
chr4 (245-293)||(29468575-29468623)
chr4 (245-293)||(29778996-29779044)
[»] chr6 (11 HSPs)
chr6 (213-293)||(34063375-34063455)
chr6 (210-277)||(34620946-34621013)
chr6 (210-277)||(34748383-34748450)
chr6 (210-280)||(882746-882816)
chr6 (210-269)||(2493977-2494036)
chr6 (193-278)||(26492574-26492659)
chr6 (226-293)||(25208702-25208769)
chr6 (210-277)||(32888915-32888982)
chr6 (210-280)||(9505830-9505900)
chr6 (89-154)||(33136581-33136646)
chr6 (210-262)||(4910968-4911020)
[»] scaffold0361 (1 HSPs)
scaffold0361 (210-277)||(14072-14139)
[»] chr8 (16 HSPs)
chr8 (210-293)||(32927952-32928035)
chr8 (204-267)||(8252852-8252915)
chr8 (214-293)||(8700900-8700979)
chr8 (210-293)||(32767447-32767530)
chr8 (209-269)||(2764435-2764495)
chr8 (210-277)||(4950543-4950610)
chr8 (210-293)||(16972006-16972089)
chr8 (115-150)||(34469250-34469285)
chr8 (214-279)||(32809771-32809836)
chr8 (213-278)||(34469364-34469429)
chr8 (210-267)||(38875223-38875280)
chr8 (229-293)||(10368044-10368108)
chr8 (245-293)||(19649233-19649281)
chr8 (245-293)||(36779438-36779486)
chr8 (86-154)||(37061433-37061501)
chr8 (218-266)||(43492206-43492254)
[»] chr5 (12 HSPs)
chr5 (210-276)||(4306572-4306638)
chr5 (60-185)||(10859888-10860013)
chr5 (246-293)||(19563761-19563808)
chr5 (210-280)||(35138978-35139048)
chr5 (210-255)||(10898781-10898825)
chr5 (214-279)||(32693754-32693819)
chr5 (115-184)||(38592178-38592247)
chr5 (90-154)||(13224717-13224780)
chr5 (245-293)||(19204015-19204063)
chr5 (245-293)||(22811079-22811127)
chr5 (210-293)||(36639997-36640081)
chr5 (90-130)||(42013571-42013611)
[»] scaffold0036 (1 HSPs)
scaffold0036 (117-183)||(999-1065)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 51666997 - 51667277
Alignment:
Q  12 tattctattacaaagcgtgaaaccttggtgctgtggttggttcgcaagtgtatgcttggttccatttttcgacaagacaaaattgattttaaagatgtac 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51666997 tattctattacaaagtgtgaaaccttggtgctgtggttggttcgcaagtgtatgcttggttccatttttcgacaagacaaaattgattttaaagatgtac 51667096  T
Q  112 aactgattttgacatgttttgatgctctcaagtataattgattataacatgaagccagaatttggagtttttgcaactatgattgatattcagccttgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51667097 aactgattttgacatgttttgatgctctcaagtataattgattataacatgaagccagaatttggagtttttgcaactatgattgatattcagccttgaa 51667196  T
Q  212 tttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51667197 tttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacatccagctcaattttattcataatcaat 51667277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 40339279 - 40339349
Alignment:
Q  203 agccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctc 273  Q
    |||||||||||||||||||||  ||||||||| | ||| || ||||||||||| |||||||||||||||||    
T  40339279 agccttgaatttattgttcaattcacttttacctaaatatatccaaacataaaccactttacattcagctc 40339349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 35264436 - 35264367
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttt 279  Q
    ||||||||||||||  || |||||||||||| ||||||||||||| ||||||||| |||| |||| ||||    
T  35264436 aatttattgttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcactttt 35264367  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 3776598 - 3776665
Alignment:
Q  226 cacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||| ||| || |||| |||||||||||||||||||| ||||||||||  || ||||||||    
T  3776598 cacttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagccagaatcaatt 3776665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 37335063 - 37334976
Alignment:
Q  206 cttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||| |||||||||| || ||||| |||||| ||  || |||||||||||||||| |||| |||||||||| ||  ||||||||    
T  37335063 cttgaattcattgttcaactcatttttatatgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaatt 37334976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 41591361 - 41591308
Alignment:
Q  227 acttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    |||||||||||||| || ||||||||||||||||||| ||||| |||| |||||    
T  41591361 acttttacatgaatgtatccaaacataaatcactttaaattcaactcattttta 41591308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 25129564 - 25129493
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttat 281  Q
    ||||||||||| ||  ||||||||||| |||  | ||||||||||||||| ||||||||| |||| ||||||    
T  25129564 aatttattgttaaatccacttttacataaatacatccaaacataaatcacgttacattcaactcacttttat 25129493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 32112070 - 32112137
Alignment:
Q  226 cacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||| |||  | |||||||||||| ||||| |||||| |||| |||||| |||||||||||    
T  32112070 cacttttacataaataaatccaaacataaattacttttcattcaactcatttttatccataatcaatt 32112137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 41596158 - 41596107
Alignment:
Q  226 cacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    ||||||| ||||||| || ||||||| ||||||||||||||||| |||||||    
T  41596158 cacttttccatgaatgtatccaaacagaaatcactttacattcaactcaatt 41596107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 46853559 - 46853500
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    ||||||||||||||| ||||||||||| ||| || ||  |||||||||||||||| ||||    
T  46853559 aatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttca 46853500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 27266819 - 27266765
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttac 264  Q
    |||||||||||||||  |||||||||||||  || | ||||||||||||||||||    
T  27266819 aatttattgttcaactaacttttacatgaaaatatctaaacataaatcactttac 27266765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 30958099 - 30958161
Alignment:
Q  213 ttattgttcaacgcacttttacatgaatctacccaaacataaat-cactttacattcagctca 274  Q
    |||||||||||  ||||||||||||||| || ||||||||||||  |||||||||||| ||||    
T  30958099 ttattgttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactca 30958161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 30973911 - 30973973
Alignment:
Q  213 ttattgttcaacgcacttttacatgaatctacccaaacataaat-cactttacattcagctca 274  Q
    |||||||||||  ||||||||||||||| || ||||||||||||  |||||||||||| ||||    
T  30973911 ttattgttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactca 30973973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 21007804 - 21007763
Alignment:
Q  89 caaaattgattttaaagatgtacaactgattttgacatgttt 130  Q
    ||||||||||||||||||| || || ||||||||||||||||    
T  21007804 caaaattgattttaaagatatataattgattttgacatgttt 21007763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 7012679 - 7012727
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  7012679 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 7012727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 10852775 - 10852727
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 10852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 48411115 - 48411175
Alignment:
Q  214 tattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctca 274  Q
    ||||||||||| |||||||| || |||||| |||| |||||| ||| ||||||||| ||||    
T  48411115 tattgttcaactcacttttaaattaatctatccaagcataaaacacgttacattcaactca 48411175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 49526747 - 49526683
Alignment:
Q  229 ttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||| || |||||||||||||| |||||| |||  ||| ||||| ||| ||||||||    
T  49526747 ttttacatgaatgtatccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaatt 49526683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 15220886 - 15220804
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaat 292  Q
    ||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||| |||| ||||  |||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaat 15220804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 4908833 - 4908924
Alignment:
Q  193 attgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattca 284  Q
    |||||| ||||||||| | ||||||||||||  |||||| |||||||| || ||||||||||||||||||||||  | |||| |||||||||    
T  4908833 attgattttcagccttaactttattgttcaatccactttaacatgaatgtatccaaacataaatcactttacatgaaactcacttttattca 4908924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 44439314 - 44439371
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacatt 267  Q
    ||||||||||||||| ||||||||||| ||  || |||||||||||||||||||||||    
T  44439314 aatttattgttcaactcacttttacataaacatatccaaacataaatcactttacatt 44439371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 3853932 - 3853996
Alignment:
Q  229 ttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||| || |||||||||||||| |||||||||| |||| ||||| ||| ||||||||    
T  3853932 ttttacatgaatgtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaatt 3853996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 1976889 - 1976822
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||| || |||||| |||| |||||||    
T  1976889 aatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaatt 1976822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 10918609 - 10918699
Alignment:
Q  203 agccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||| ||||||||||  ||  ||||||||||  |||  | ||||||||||||||||||||||||| |||| |||||| || ||||||||    
T  10918609 agccttaaatttattgtcaaatccacttttacacaaatacatccaaacataaatcactttacattcaactcacttttatccaaaatcaatt 10918699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 28206737 - 28206801
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctca 274  Q
    |||||||| ||||||  |||||||||||||| |||| |||||||||| | |||||||||| ||||    
T  28206737 aatttattattcaacaaacttttacatgaatgtacctaaacataaattaatttacattcaactca 28206801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 4119501 - 4119395
Alignment:
Q  161 tgaagccagaatttggagtttttgcaactatgattgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcact 260  Q
    |||||| |||||||| || ||||||  |||| |||||  || |||| ||||| ||||| ||||  |||  |||||||||| ||  |||||||||||||||    
T  4119501 tgaagctagaatttgaagcttttgccgctataattgacttttagccatgaatgtattgatcaattcacgcttacatgaatgtattcaaacataaatcact 4119402  T
Q  261 ttacatt 267  Q
    |||||||    
T  4119401 ttacatt 4119395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 4894182 - 4894112
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    |||||||| |||||  |||||||| |||||| || | |||||||||||||||||| |||| || |||||||    
T  4894182 aatttattattcaagtcacttttaaatgaatgtatctaaacataaatcactttaccttcaacttaatttta 4894112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 11510965 - 11511062
Alignment:
Q  161 tgaagccagaatttggagtttttgcaactatgattgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcac 259  Q
    |||||| ||||||||||||||||||  |||  ||| || || | |||  ||||||||||||||| |||||||| |||||| || | |||||||||||||    
T  11510965 tgaagctagaatttggagtttttgcctctacaatttattttaa-cctcaaatttattgttcaacccacttttatatgaatgtagctaaacataaatcac 11511062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 16518838 - 16518892
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttac 264  Q
    ||||||| ||||||| ||||||||||||||| || ||||||| |||||| |||||    
T  16518838 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttac 16518892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 36374238 - 36374279
Alignment:
Q  89 caaaattgattttaaagatgtacaactgattttgacatgttt 130  Q
    ||||||||||||||||| |||| || ||||||||||||||||    
T  36374238 caaaattgattttaaaggtgtataattgattttgacatgttt 36374279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 8843061 - 8843109
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||||| |||||||||| | ||||||||| || ||||||||    
T  8843061 ccaaacataaatcattttacattcaacccaattttatccagaatcaatt 8843109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 23359990 - 23359942
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  23359990 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 23359942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 33019181 - 33019129
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcacttt 262  Q
    ||||||| ||||||| |||||||||||||||  | ||||||| ||||||||||    
T  33019181 aatttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttt 33019129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 40401666 - 40401622
Alignment:
Q  212 tttattgttcaacgcacttttacatgaatctacccaaacataaat 256  Q
    |||||||||||||  |||||||||||||| || ||||||||||||    
T  40401666 tttattgttcaactgacttttacatgaatgtatccaaacataaat 40401622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 18325228 - 18325074
Alignment:
Q  115 tgattttgacatgttttgatgctctcaagtataattgattataacatgaagccagaatttggagtttttgcaactatgattgatattcagccttgaattt 214  Q
    |||||||||||||||| |||  |||| |||| |||||||| |||| ||||  ||||||| ||||||||||   |||  |||||| || | |||   ||||    
T  18325228 tgattttgacatgtttggattttctcgagtagaattgattttaacttgaaatcagaattaggagtttttgtttctacaattgatttttatcctcagattt 18325129  T
Q  215 attgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    ||| |||||| ||||||||||||||| || ||| ||||||||||||||| |||||    
T  18325128 attattcaacccacttttacatgaatgtatccatacataaatcactttatattca 18325074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 5268272 - 5268362
Alignment:
Q  203 agccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||| ||| |||||| ||||||||||||||| ||  |||||| ||||||||||||||||| |||| |||||  || ||||||||    
T  5268272 agccttgaattcatttttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatt 5268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 213300 - 213247
Alignment:
Q  216 ttgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    ||||||||| |||||||||||| || || |||||||||||||||||||||||||    
T  213300 ttgttcaactcacttttacatgcatgtatccaaacataaatcactttacattca 213247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 34875114 - 34875059
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttaca 265  Q
    ||||||||||||||| ||||||| ||||||| || ||||| |||||||||||||||    
T  34875114 aatttattgttcaacccacttttgcatgaatttatccaaagataaatcactttaca 34875059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 48549038 - 48548971
Alignment:
Q  211 atttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattt 278  Q
    |||||||||||||| ||||||||||| ||| || | |||||||||||| ||||| |||| ||||||||    
T  48549038 atttattgttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactcaattt 48548971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 45557362 - 45557415
Alignment:
Q  206 cttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcacttta 263  Q
    ||||||||||||||||||| ||||||||||||    || |||||||||||||||||||    
T  45557362 cttgaatttattgttcaactcacttttacatg----taaccaaacataaatcacttta 45557415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 7524173 - 7524256
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||| ||||||| ||||||||||| ||| |  ||||||| |||||||||||| || |||||| ||||| | | ||||||||    
T  7524173 aatttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaatt 7524256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 28465020 - 28464961
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    ||||||||||||||| || |||||||| ||| ||| |||||||||||||  |||||||||    
T  28465020 aatttattgttcaacccatttttacataaatgtacacaaacataaatcatgttacattca 28464961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 15478194 - 15478108
Alignment:
Q  59 gtgtatgcttggttccatttttcgacaagacaaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagta 145  Q
    ||||||| ||||||||| |||| ||  || |||| |||||||||  | |||| || |||||||||||||||| | ||||||||||||    
T  15478194 gtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttggttgctctcaagta 15478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 48635219 - 48635158
Alignment:
Q  207 ttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    |||||||||| ||| ||| |||||| |||||||| || |||||||||||||||||| ||||||    
T  48635219 ttgaatttatcgttaaacccacttt-acatgaatgtatccaaacataaatcactttccattca 48635158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 6744748 - 6744789
Alignment:
Q  144 tataattgattataacatgaagccagaatttggagtttttgc 185  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  6744748 tataattgattatagcatgaagctagaatttgcagtttttgc 6744789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 29988400 - 29988445
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatca 290  Q
    ||||||| |||||||| |||||||| |||| |||||||||||||||    
T  29988400 ccaaacacaaatcactatacattcaactcacttttattcataatca 29988445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 3016230 - 3016303
Alignment:
Q  218 gttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||| ||||||||||||||| || ||||||||  ||||||||| |||||  ||  ||||||||| ||||||||    
T  3016230 gttcaactcacttttacatgaatgtatccaaacat--atcactttatattcaattctcttttattcaaaatcaatt 3016303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 4347037 - 4347085
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  4347037 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 4347085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 7765346 - 7765298
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||| |||||||||| ||| || |||| ||||||||||||||||||    
T  7765346 ccaaacaaaaatcacttttcatccaactcacttttattcataatcaatt 7765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 24587972 - 24588032
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatcta-cccaaacataaatcactttacattca 269  Q
    |||||||| |||||| |||||||||||||| |||  | ||||||||||||||| |||||||    
T  24587972 aatttattattcaactcacttttacatgaacctatgcaaaacataaatcacttaacattca 24588032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 29759714 - 29759762
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||||| |||||||||| |||| |||||  |||||||||||    
T  29759714 ccaaacataaatcattttacattcaactcacttttaaccataatcaatt 29759762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 31362749 - 31362801
Alignment:
Q  229 ttttacatgaatctacccaaacataaatcactttacattcagctcaattttat 281  Q
    |||||||||||  || |||||||||||||| ||||| |||| |||||||||||    
T  31362749 ttttacatgaaattatccaaacataaatcattttaccttcatctcaattttat 31362801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 40561779 - 40561714
Alignment:
Q  214 tattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttt 279  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||| |||| |||||||||    
T  40561779 tattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 21436087 - 21435940
Alignment:
Q  147 aattgattataacatgaagccagaattt-ggagtttttgcaactatgattgatattcagccttgaatttattgttcaacgcacttttacatgaatctacc 245  Q
    |||||||| |||| |||||| ||||||| |||| ||||||  |||  |||||  || ||  ||||| |||||||||||  ||||||| ||||||   | |    
T  21436087 aattgattttaacttgaagctagaattttggagcttttgcctctaccattgaattttaggtttgaagttattgttcaatccacttttccatgaaggcatc 21435988  T
Q  246 caaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||| |||||| |||||| ||| ||||||||||||    
T  21435987 caaacataaatcactttgcattcaactcaatgttagtcataatcaatt 21435940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 38123691 - 38123608
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||| ||||| ||||||||||||||| |  || |||| |||| ||||||| |||| |||||||||| ||||||||||||    
T  38123691 aatttattggtcaactcacttttacatgaatgtgtccgaacacaaattactttaccttcaactcaattttagtcataatcaatt 38123608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 12306792 - 12306866
Alignment:
Q  219 ttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||| |||||||||||||||||| |||||||||||||||||||  |||| |||| |||||  || ||||||||    
T  12306792 ttcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccagaatcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 44570765 - 44570695
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    ||||||||  ||||| |||||||| |||||| ||  |||||||||||||||||||||||| ||||||||||    
T  44570765 aatttatttatcaactcacttttatatgaatataatcaaacataaatcactttacattcaactcaatttta 44570695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 45557435 - 45557508
Alignment:
Q  220 tcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||| ||||||||||||||| || ||||||| |||||||||||| |||| |||| ||||| ||| ||||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaatt 45557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 40491654 - 40491721
Alignment:
Q  226 cacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||| || ||||| |||||||||||||| |||| |||| ||||| ||| ||||||||    
T  40491654 cacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 46344571 - 46344641
Alignment:
Q  212 tttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttatt 282  Q
    ||||||||| ||  ||||||| ||| ||| || | ||||||||||||||| ||||||| ||||||||||||    
T  46344571 tttattgtttaatccacttttgcataaatatatctaaacataaatcacttaacattcaactcaattttatt 46344641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 48158813 - 48158883
Alignment:
Q  89 caaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgattataac 159  Q
    ||||||||||| | |||  ||| || |||||||||||||||| | ||||||| |||| |||||||||||||    
T  48158813 caaaattgattatgaaggcgtaaaattgattttgacatgtttggttgctctcgagtaaaattgattataac 48158883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 29829368 - 29829311
Alignment:
Q  236 tgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||| || ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaactcatttttagccagaatcaatt 29829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 45004907 - 45004972
Alignment:
Q  89 caaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgatt 154  Q
    ||||||||||| || || |||| || |||||||||||||||| | | ||||| |||||||||||||    
T  45004907 caaaattgattctagaggtgtagaattgattttgacatgtttggttactctctagtataattgatt 45004972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 4228607 - 4228655
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||||||||| |||||| |||| ||||| ||| ||||||||    
T  4228607 ccaaacataaatcacttttcattcaactcacttttaatcaaaatcaatt 4228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 7276009 - 7276073
Alignment:
Q  203 agccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacatt 267  Q
    |||||||||||| ||||||||  ||||||| ||||| | ||   |||||||||||||||||||||    
T  7276009 agccttgaattttttgttcaatccacttttgcatgagtataatgaaacataaatcactttacatt 7276073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 45369081 - 45369149
Alignment:
Q  86 agacaaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgatt 154  Q
    ||||||||||||||| | || |||| |  ||||||||| |||||| |||| ||||||||| ||||||||    
T  45369081 agacaaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgatt 45369149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 48253089 - 48253153
Alignment:
Q  90 aaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgatt 154  Q
    |||||||||| || ||| ||| || ||||||||||||||||   ||||||||||| |||||||||    
T  48253089 aaaattgattatagagaggtaaaattgattttgacatgtttgtttgctctcaagtctaattgatt 48253153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 33843770 - 33843854
Alignment:
Q  209 gaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||||||| |||| |||||||||| || |||||||||||||||||||||| || |||| |||||  || ||||||||    
T  33843770 gaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaatt 33843854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 22250286 - 22250369
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||| |  ||||||||||||||| || |||||  |||||||||| ||||||| |||  ||||| ||||||||||||    
T  22250286 aatttattgttcgattcacttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaatt 22250369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 27096623 - 27096564
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    ||||||||||||||| ||||||||||| ||| ||  |||||||||||||| |||||||||    
T  27096623 aatttattgttcaacacacttttacataaatatattcaaacataaatcaccttacattca 27096564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 8604647 - 8604593
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttac 264  Q
    ||||||| ||| || |||||||||||||||| || ||||||||||||||||||||    
T  8604647 aatttatagttgaatgcacttttacatgaatgtatccaaacataaatcactttac 8604593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 17898159 - 17898089
Alignment:
Q  204 gccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctca 274  Q
    |||||| | |||||||||||  ||||||||| | ||| || ||||||||||||||||||||||||| ||||    
T  17898159 gccttggaattattgttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactca 17898089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 55927795 - 55927725
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||||| |||  | || ||||||||||    
T  55927795 aatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacattaactccaactcaatttta 55927725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 36150628 - 36150676
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| ||||| ||| ||||||||    
T  36150628 ccaaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 21691237 - 21691186
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactt 261  Q
    ||||||| ||||||| ||||||||||||||| || ||||||| |||||||||    
T  21691237 aatttatagttcaacacacttttacatgaatatatccaaacacaaatcactt 21691186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 28178962 - 28178856
Alignment:
Q  118 ttttgacatgttttgatgctctcaagtataattgattataacatgaagccagaatttggagtttttgcaactatgattgatattcagccttgaatttatt 217  Q
    |||||||||||||  ||| | ||||||| |||||||| |||  |||| | || |||||||||||| || ||||  |||||  || |||||| ||||||||    
T  28178962 ttttgacatgtttgaatgttttcaagtaaaattgattctaatttgaatctagtatttggagttttcgccactacaattgaattttagccttaaatttatt 28178863  T
Q  218 gttcaac 224  Q
    |||||||    
T  28178862 gttcaac 28178856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 4451518 - 4451571
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcacttta 263  Q
    ||||||||||| ||| ||||||||| | ||| | ||||||||||||||||||||    
T  4451518 aatttattgtttaacccacttttacgttaatgtgcccaaacataaatcacttta 4451571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 36639855 - 36639908
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcacttta 263  Q
    |||||||||||||||  || | ||||||||| || |||||||||||||||||||    
T  36639855 aatttattgttcaacatacctgtacatgaatgtatccaaacataaatcacttta 36639908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 11302498 - 11302538
Alignment:
Q  253 aaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||| |||||||||| |||| ||||||||||||||||||    
T  11302498 aaatcattttacattcatctcacttttattcataatcaatt 11302538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 29468623 - 29468575
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||| ||||||||||||||||||| |||| |||||  |||||||||||    
T  29468623 ccaaatataaatcactttacattcaactcatttttagccataatcaatt 29468575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 29779044 - 29778996
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||| ||||||||||||| ||||| |||| |||||| |||||||||||    
T  29779044 ccaaagataaatcactttatattcaactcacttttatccataatcaatt 29778996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 34063375 - 34063455
Alignment:
Q  213 ttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||| ||| ||||||||||| ||| || |||||||||||||||||||  |||| | |||||||| ||||||||||||    
T  34063375 ttattgttaaacccacttttacataaatataaccaaacataaatcactttagcttcaacccaattttaatcataatcaatt 34063455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 34620946 - 34621013
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    |||||||| |||||| ||||||||||| ||| || |||||||||||||||||||| |||| |||||||    
T  34620946 aatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaatt 34621013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 34748383 - 34748450
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    |||||||| |||||| ||||||||||| ||| || |||||||||||||||||||| |||| |||||||    
T  34748383 aatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaatt 34748450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 882746 - 882816
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    ||||||||||| ||| ||||||| ||||||| || |||||||||||||| ||||| |||| ||||||||||    
T  882746 aatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaatttta 882816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 2494036 - 2493977
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    ||||||||||||||| ||||||||||| ||| ||  |||||||||||||| |||||||||    
T  2494036 aatttattgttcaacacacttttacataaatatattcaaacataaatcaccttacattca 2493977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 26492574 - 26492659
Alignment:
Q  193 attgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattt 278  Q
    |||||| || ||||| |||| ||||||||||  ||| | ||||| ||| || ||||||||||| ||||||||||||| ||||||||    
T  26492574 attgatttttagcctcgaatatattgttcaatccacgtatacataaatatatccaaacataaaacactttacattcaactcaattt 26492659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 25208702 - 25208769
Alignment:
Q  226 cacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||| |||||| | |||||||||||| |||||||||| |||| ||||| | | ||||||||    
T  25208702 cacttttacataaatctatcgaaacataaatcattttacattcaactcacttttaattaaaatcaatt 25208769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 32888982 - 32888915
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    ||||||||||||||| ||||||||||| ||| ||  ||||||||||||| ||||  |||| |||||||    
T  32888982 aatttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaactcaatt 32888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 9505830 - 9505900
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    ||||||||||||||| ||||||||||||||| ||    |||||| |||||||| | |||| ||||||||||    
T  9505830 aatttattgttcaacacacttttacatgaatatataataacatatatcactttgccttcaactcaatttta 9505900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 33136646 - 33136581
Alignment:
Q  89 caaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgatt 154  Q
    ||||||| ||| || || |||| || |||||||||||||||| | ||||||| |||||||||||||    
T  33136646 caaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatt 33136581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 4910968 - 4911020
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcacttt 262  Q
    ||||||| |||| || ||||||||||| ||| || ||||||||||||||||||    
T  4910968 aatttatagttcgactcacttttacataaatgtatccaaacataaatcacttt 4911020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 14139 - 14072
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    |||||||| |||||| |||||| |||||||| || |||||||||||||||||||| |||| |||||||    
T  14139 aatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaatt 14072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 32927952 - 32928035
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||| ||||||| ||||||||||||||| || ||||||| |||||||||| | |||| |||||||||| | | ||||||||    
T  32927952 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaatt 32928035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 8252852 - 8252915
Alignment:
Q  204 gccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacatt 267  Q
    |||||||||||| |||||||| |||||||||||| || || | ||||||||| |||||||||||    
T  8252852 gccttgaatttactgttcaacccacttttacatgcatgtatctaaacataaaccactttacatt 8252915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 8700900 - 8700979
Alignment:
Q  214 tattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||| |||||||||| |||| ||   |||||||||| ||||||| |||| ||||||||||  |||||||||||    
T  8700900 tattgttcaactcacttttacaagaatttatttaaacataaattactttaccttcaactcaattttaaacataatcaatt 8700979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 32767447 - 32767530
Alignment:
Q  210 aatttattgttcaacgcacttttaca--tgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||| ||||||||||  ||||| || |||||||||||||| ||||||| || |||| |||||  |||||||||||    
T  32767447 aatttattgttcaactcacttttacacatgaatgtatccaaacataaatcaatttacatccaactcactttta--cataatcaatt 32767530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 2764495 - 2764435
Alignment:
Q  209 gaatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattca 269  Q
    |||||||| ||||||| ||||||||| ||||| || ||||| ||||||||||||| |||||    
T  2764495 gaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcactttatattca 2764435  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 4950543 - 4950610
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatt 277  Q
    |||||||| |||||| ||||||  ||| ||| || |||||||||||||||||||| |||| |||||||    
T  4950543 aatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactcaatt 4950610  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 16972089 - 16972006
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||  ||||||||||||||| ||  |||||| |||||| ||||| |||| |||| ||||| ||  ||||||||    
T  16972089 aatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaatcaatt 16972006  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 34469250 - 34469285
Alignment:
Q  115 tgattttgacatgttttgatgctctcaagtataatt 150  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34469250 tgattttgacatgttttgatgttctcaagtataatt 34469285  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 32809771 - 32809836
Alignment:
Q  214 tattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttt 279  Q
    |||||||||||  ||||||||||||||  | ||||||| |||||||||||| |||| |||| ||||    
T  32809771 tattgttcaacaaacttttacatgaatagaaccaaacacaaatcactttaccttcaactcattttt 32809836  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 34469364 - 34469429
Alignment:
Q  213 ttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaattt 278  Q
    |||||||||||| |||||||||||| || ||  ||||| ||||| | |||||||||| ||||||||    
T  34469364 ttattgttcaactcacttttacatgtatatatacaaacttaaattattttacattcaactcaattt 34469429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 38875280 - 38875223
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacatt 267  Q
    ||||||| ||||| |||| ||||| || ||| || |||||||||||||||||||||||    
T  38875280 aatttatcgttcagcgcatttttaaataaatgtatccaaacataaatcactttacatt 38875223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 10368044 - 10368108
Alignment:
Q  229 ttttacatgaatctacccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||| || | ||||| |||||||||||| |||| |||| ||||| ||| ||||||||    
T  10368044 ttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaatt 10368108  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 19649233 - 19649281
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  19649233 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 19649281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 36779438 - 36779486
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||||||||| |||||||||||| |||| ||||| ||| ||||||||    
T  36779438 ccaaacataaattactttacattcaactcacttttaatcaaaatcaatt 36779486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 37061501 - 37061433
Alignment:
Q  86 agacaaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgatt 154  Q
    ||||||| |||||||||  | |||| || |||| ||||||||||| |||||| ||||||||| ||||||    
T  37061501 agacaaatttgattttagcggtgtataattgatattgacatgtttggatgctttcaagtatagttgatt 37061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 43492254 - 43492206
Alignment:
Q  218 gttcaacgcacttttacatgaatctacccaaacataaatcactttacat 266  Q
    |||||||  |||||||||||||| || |||||||||||||| |||||||    
T  43492254 gttcaacttacttttacatgaatgtatccaaacataaatcattttacat 43492206  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 4306572 - 4306638
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaat 276  Q
    ||||||||||||||  |  |||||||||||| || |||||||||||||| |||||||||| ||||||    
T  4306572 aatttattgttcaattcttttttacatgaatgtatccaaacataaatcattttacattcaactcaat 4306638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 10860013 - 10859888
Alignment:
Q  60 tgtatgcttggttccatttttcgacaagacaaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgattataac 159  Q
    |||||| ||||||||| |||| ||  || ||||||| ||| || || |||| || |||||||||| |||||  ||| ||||  ||| |||||||| ||||    
T  10860013 tgtatgtttggttccacttttggaagaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaac 10859914  T
Q  160 atgaagccagaatttggagtttttgc 185  Q
     |||||| ||||||||||| ||||||    
T  10859913 ttgaagctagaatttggagcttttgc 10859888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 19563808 - 19563761
Alignment:
Q  246 caaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||| ||||||||||||||| |||||| || ||||||||    
T  19563808 caaacataaatcattttacattcagctcatttttatccagaatcaatt 19563761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 35139048 - 35138978
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttta 280  Q
    ||||||||||||||| |||||| | |||||| || |  ||||||||||| ||||| |||| ||||||||||    
T  35139048 aatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaatttta 35138978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 10898781 - 10898825
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacataaa 255  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||    
T  10898781 aatttattgttcaactcacttttacatgaa-ctatccaaacataaa 10898825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 32693754 - 32693819
Alignment:
Q  214 tattgttcaacgcacttttacatgaatctacccaaacataaatcactttacattcagctcaatttt 279  Q
    ||||||| |||  |||||| ||||||| || ||||| ||||||||||||| ||||| |||||||||    
T  32693754 tattgttaaactgacttttgcatgaatgtatccaaatataaatcactttatattcacctcaatttt 32693819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 38592178 - 38592247
Alignment:
Q  115 tgattttgacatgttttgatgctctcaagtataattgattataacatgaagccagaatttggagtttttg 184  Q
    |||| |||| |||||| | |||||||||||| |||||||| |||  ||||||||||||||| || |||||    
T  38592178 tgatattgatatgtttggttgctctcaagtagaattgattctaatttgaagccagaatttgtagcttttg 38592247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 13224780 - 13224717
Alignment:
Q  90 aaaattgattttaaagatgtacaactgattttgacatgttttgatgctctcaagtataattgatt 154  Q
    |||||||||| || ||||||| || |||||||||||||||| |||| || | |||||||||||||    
T  13224780 aaaattgattctagagatgtataattgattttgacatgtttggatgttc-cgagtataattgatt 13224717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 19204063 - 19204015
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||| |||||||||| ||| || |||| ||||||||||||||||||    
T  19204063 ccaaacaaaaatcacttttcatccaactcacttttattcataatcaatt 19204015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 22811079 - 22811127
Alignment:
Q  245 ccaaacataaatcactttacattcagctcaattttattcataatcaatt 293  Q
    ||||||||||||||||||||||||| |||| |||||  || ||||||||    
T  22811079 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 22811127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 36639997 - 36640081
Alignment:
Q  210 aatttattgttcaacgcacttttacatgaatctacccaaacat-aaatcactttacattcagctcaattttattcataatcaatt 293  Q
    |||||| |||||| | |||||||||||||| ||| | |||||| ||||| |||||| |||| || ||||||| | ||||||||||    
T  36639997 aatttaatgttcacctcacttttacatgaacctatcaaaacataaaatccctttaccttcaactaaattttagtgataatcaatt 36640081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 42013611 - 42013571
Alignment:
Q  90 aaaattgattttaaagatgtacaactgattttgacatgttt 130  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  42013611 aaaattgattttaaagatgtgtaattgattttgacatgttt 42013571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 1065 - 999
Alignment:
Q  117 attttgacatgttttgatgctctcaagtataattgattataacatgaagccagaatttggagttttt 183  Q
    |||||||||||||| |||  ||| |||||||||||||| ||||  ||||| |||||||| |||||||    
T  1065 attttgacatgtttggatattcttaagtataattgattctaactagaagctagaatttgaagttttt 999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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