View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_high_14 (Length: 250)
Name: NF21224_high_14
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 35321832 - 35321594
Alignment:
| Q |
12 |
acagatccaaagagaaggaaagtgcagttgaaagctaatccaattgctttccaataaggaccaagtaaaccttccaacacttcaaaccactgcacaaaat |
111 |
Q |
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| T |
35321832 |
acagatccaaagagaaggaaagtgcagttgaaagctaatccaattgctttccaataaggaccaagtaaaccttccaacacttcaaaccactgcacaaaat |
35321733 |
T |
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| Q |
112 |
gaaattaaaccatcaatgtctttcttcaaacattttaacctaannnnnnnaaaaaatagtctgcaactgcaatagcggccttgaccatgagactttttat |
211 |
Q |
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| T |
35321732 |
gaaattaaaccatcaatgtctttcttcaaacattttaacctaatttttttaaaaaatattctgcaaccgcaatagcggctgtgaccatgagactttttat |
35321633 |
T |
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| Q |
212 |
gtctccgctataataaatccgatcacatcgattcgacca |
250 |
Q |
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| T |
35321632 |
gtctccgcgataataaatccgatcacatcgattcgacca |
35321594 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 24627082 - 24626990
Alignment:
| Q |
11 |
cacagatccaaagagaaggaaagtgcagttgaaagctaatccaattgctttccaataaggaccaagtaaaccttccaacacttcaaaccactg |
103 |
Q |
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| T |
24627082 |
cacagatccaaagaggaggaaagtacaattgaaagctagccccaatgctttccaatatggacccagtaacccatcaagcacttcaaaccactg |
24626990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 4532791 - 4532736
Alignment:
| Q |
12 |
acagatccaaagagaaggaaagtgcagttgaaagctaatccaattgctttccaata |
67 |
Q |
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| T |
4532791 |
acagatccaaagagaagaaaagtgcaattgaaggctaaccccaatgctttccaata |
4532736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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