View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_high_5 (Length: 412)
Name: NF21224_high_5
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 396
Target Start/End: Original strand, 30317404 - 30317776
Alignment:
| Q |
24 |
aagaatataatacatccaaagagcaagagttattaatggtgagtttttattttgaaaataaaattgacaaagaaaaagaacatgagtnnnnnnnnntagt |
123 |
Q |
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| T |
30317404 |
aagaacataatacatccaaagagcaagagttattaatggtgagtttttattttgaaaataaaattgacagagaaaaagaacatgagtaaaaaaaaatagt |
30317503 |
T |
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| Q |
124 |
agtggattgttatgtaattttagtggttattagttatcttaagtttatagtgtatatatgtatggatggatttgttgtttcaatttcttgagaatattat |
223 |
Q |
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| T |
30317504 |
agtggattgttatgtaattttagtggttattagttatcttaagtttatagtgtatatatatatggatggatttgttgtttcaatttcttgagaatattat |
30317603 |
T |
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| Q |
224 |
acattataccttacattctagttattttccttccatgaaattaggaacaagcaataccaagtactattgtatccatttatatggacttcatttcatctag |
323 |
Q |
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| T |
30317604 |
acattataccttacattctagttattttcctt-caggaaattaggaacaagcaataccaagtactattgtatccattcatatggacttcatttcatctag |
30317702 |
T |
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| Q |
324 |
aaatgacctgtt-aaaaattaactaaatttagcaaactttagaaaggtttacatatttacatgttctttatact |
396 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30317703 |
aaatgacctgttaaaaaattaactaaatttagcaaactttagaaaggtttacatatttacatgttctttatact |
30317776 |
T |
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