View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_high_7 (Length: 404)
Name: NF21224_high_7
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 10969021 - 10968633
Alignment:
| Q |
1 |
gtatttgaatcacaatttctaaaccannnnnnnattcttaaatttaatattttttagacaataaaacaacttgtgattggggcaaacaatatccctataa |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969021 |
gtatttgaatcacaatttctaaaccatttttttattcttaaatttaatattttttagacaataaaacaacttgtgattggggcaaacaatatccctataa |
10968922 |
T |
|
| Q |
101 |
cattacaatcttttgttaatcaattcgccatactaggttgcttcttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968921 |
cattacaatcttttgttaatcaattcgccatactaggttgcttcttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttc |
10968822 |
T |
|
| Q |
201 |
ttctcttgcctctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968821 |
ttctcttgcctctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaac |
10968722 |
T |
|
| Q |
301 |
tcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10968721 |
tcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttg |
10968633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 145 - 389
Target Start/End: Complemental strand, 10982827 - 10982583
Alignment:
| Q |
145 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
244 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10982827 |
ttctgcttccacaactgagccaacttattcaaagcgacaagggaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
10982728 |
T |
|
| Q |
245 |
tcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
344 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10982727 |
gtctaatctctttccccttatcggagtccattaattccttaatttgatcccctaactcggttccactcacaaacccgtcttttgaatccttcaattccaa |
10982628 |
T |
|
| Q |
345 |
agcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10982627 |
agcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
10982583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 389
Target Start/End: Complemental strand, 11003030 - 11002813
Alignment:
| Q |
172 |
ttcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagt |
271 |
Q |
| |
|
|||||| ||||||| ||| ||||||| || || ||||||| ||||||||| |||||||||| ||||| | | ||||||||||||||||| || || | |
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| T |
11003030 |
ttcaaatcaacaagagaagatccacctcctccttttgcctccttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgatt |
11002931 |
T |
|
| Q |
272 |
ccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaat |
371 |
Q |
| |
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|||| || ||||||| || ||||| ||||| |||||||||||||||| | |||||| | || ||||||||||| |||||||| |||||||||||||| |
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| T |
11002930 |
ccatcaactccttaactctctcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaat |
11002831 |
T |
|
| Q |
372 |
caccttgttcagcctttg |
389 |
Q |
| |
|
|| ||||||| |||||| |
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| T |
11002830 |
cattttgttcaacctttg |
11002813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 347
Target Start/End: Complemental strand, 11080171 - 11079996
Alignment:
| Q |
172 |
ttcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagt |
271 |
Q |
| |
|
|||||| ||||||| ||| ||||||| || ||||||| || |||||||||||||||||||| ||||| | | |||| ||||||||| || || || | |
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| T |
11080171 |
ttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcacttattttcatcttcaaaattgtctctctaacctctttccccttttctgatt |
11080072 |
T |
|
| Q |
272 |
ccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagc |
347 |
Q |
| |
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|||| || ||||||| || ||||| ||||| || ||||||||||||| |||||||| || |||| ||||||||| |
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| T |
11080071 |
ccatcaactccttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 11019411 - 11019344
Alignment:
| Q |
172 |
ttcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaat |
239 |
Q |
| |
|
|||||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||||| || ||||| |
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|
| T |
11019411 |
ttcaaatcaacaagagaagatccacctcctcctcttgcctccttagcacttattttcattttcaaaat |
11019344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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