View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21224_low_13 (Length: 275)

Name: NF21224_low_13
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21224_low_13
NF21224_low_13
[»] chr2 (5 HSPs)
chr2 (1-264)||(37622540-37622804)
chr2 (203-264)||(21665919-21665980)
chr2 (195-264)||(11912964-11913033)
chr2 (200-264)||(16227587-16227651)
chr2 (83-125)||(37182379-37182421)
[»] chr7 (5 HSPs)
chr7 (199-264)||(23020700-23020765)
chr7 (201-264)||(7398272-7398335)
chr7 (203-258)||(23858897-23858952)
chr7 (214-264)||(27237641-27237691)
chr7 (212-264)||(12419715-12419767)
[»] chr5 (6 HSPs)
chr5 (203-264)||(2024856-2024917)
chr5 (196-264)||(34307350-34307418)
chr5 (201-264)||(40794541-40794604)
chr5 (210-264)||(11242534-11242588)
chr5 (204-264)||(2411913-2411973)
chr5 (203-264)||(10543505-10543566)
[»] chr4 (4 HSPs)
chr4 (204-264)||(52468115-52468175)
chr4 (203-264)||(39329622-39329683)
chr4 (200-264)||(37746938-37747002)
chr4 (204-264)||(36118675-36118735)
[»] chr8 (3 HSPs)
chr8 (203-264)||(15167632-15167693)
chr8 (203-260)||(15078583-15078640)
chr8 (204-264)||(34048926-34048986)
[»] chr1 (3 HSPs)
chr1 (204-264)||(26803784-26803844)
chr1 (203-264)||(10926162-10926223)
chr1 (210-264)||(39134941-39134995)
[»] scaffold1320 (1 HSPs)
scaffold1320 (203-260)||(1179-1236)
[»] scaffold0007 (1 HSPs)
scaffold0007 (205-264)||(231078-231137)
[»] scaffold0018 (1 HSPs)
scaffold0018 (202-264)||(173729-173790)
[»] chr3 (2 HSPs)
chr3 (218-264)||(42453253-42453299)
chr3 (203-264)||(26279366-26279427)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 37622804 - 37622540
Alignment:
Q  1 gtatcttctcaagtgattgttaaagtgaaggttggaaaacaaaggtttctagtgcttctctaaacatatataggtaccaggccggaccttggagcgtgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  37622804 gtatcttctcaagtgattgttaaagtgaaggttggaaaacaaaggtttccggtgcttctctaaacatatataggtatcgggccggaccttggaacgtgca 37622705  T
Q  101 aagagttcaatggagctggacctcctcgaagtatgaatctaaaacaaaaaattgtagtttagtagtactattaagtactacctcact-nnnnnnncaaat 199  Q
    ||||| || ||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||        |||||    
T  37622704 aagagctctatggaactggacctcctcaaagtatgaatctaaaacaaaaatttgtagtttcgtagtactactaagtactaccccactaaaaaaaacaaat 37622605  T
Q  200 tttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37622604 tttcttattatctttctctctcataccacgcgttccatcatcatcactccatcagactttccttt 37622540  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 21665980 - 21665919
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||| ||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||    
T  21665980 cttattctctttctctttgataccacgcgttccatcatcatcactccatcagactttccttt 21665919  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 11913033 - 11912964
Alignment:
Q  195 caaattttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||||||||||| ||||||||||| ||||| ||| |||||||||||| | |||||   ||||||||||    
T  11913033 caaattttcttattctctttctctctgataccacgcattccatcatcataactccattgcactttccttt 11912964  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 16227651 - 16227587
Alignment:
Q  200 tttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||| ||||||||||| ||||| |||||| ||||| ||||| |||||| | |||||||||    
T  16227651 tttcttattctctttctctctgataccacgcgtttcatcaccatcactccatcggcctttccttt 16227587  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 37182379 - 37182421
Alignment:
Q  83 cggaccttggagcgtgcaaagagttcaatggagctggacctcc 125  Q
    |||||||||| | |||||||||| |||||||||||||||||||    
T  37182379 cggaccttggggtgtgcaaagagctcaatggagctggacctcc 37182421  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 23020765 - 23020700
Alignment:
Q  199 ttttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||||||| ||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||    
T  23020765 ttttcttattctctttctctctgataccacgcgttccatcaccatcattccatcggactttccttt 23020700  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 7398272 - 7398335
Alignment:
Q  201 ttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||| |||||| |||| ||||||    
T  7398272 ttcttattttctttctctctaataccacgcgttccatcaacatcactccatcggactctccttt 7398335  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 23858897 - 23858952
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactt 258  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||| | ||||||||||    
T  23858897 cttattctctttctctctgataccacgcgttccatcaccatcactgcatcagactt 23858952  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 27237691 - 27237641
Alignment:
Q  214 tctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||| ||||| |||||||||||| ||||| |||||| |||||||||||    
T  27237691 tctctctgataccacgcgttccatcaccatcactccatcggactttccttt 27237641  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 12419767 - 12419715
Alignment:
Q  212 tttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||| |||||  ||||||||||| ||||| |||||| |||||||||||    
T  12419767 tttctctctgataccatgcgttccatcaccatcactccatcggactttccttt 12419715  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 2024917 - 2024856
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||    
T  2024917 cttattctctttctctctgataccgcgcgttccatcaccatcactccatctgactttccttt 2024856  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 34307418 - 34307350
Alignment:
Q  196 aaattttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||||||| ||||||||||| ||||| |  ||||||||| ||||| |||||| |||||||||||    
T  34307418 aaattttcttattctctttctctctgataccacatgttccatcaccatcactccatcggactttccttt 34307350  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 40794604 - 40794541
Alignment:
Q  201 ttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||||| ||||||||| | ||||| |||||||||| | ||||||||||||| ||||||||||    
T  40794604 ttcttattctctttctctttgataccacgcgttccattaccatcattccatcaaactttccttt 40794541  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 11242588 - 11242534
Alignment:
Q  210 tctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||||||||||| |||||||||||||||||| ||||   |||||||||||    
T  11242588 tctttctctctcataccacgcgttccatcatcatcactccaatggactttccttt 11242534  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 2411913 - 2411973
Alignment:
Q  204 ttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||| ||||||||| | ||||| || ||||||||| ||||| ||||||||||||||||||    
T  2411913 ttattctctttctctttgataccacgtgttccatcaccatcactccatcagactttccttt 2411973  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 10543505 - 10543566
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||| ||||||||||  |||||  ||||||||||||||||| ||| || |||||||||||    
T  10543505 cttattctctttctctcggataccatgcgttccatcatcatcactccgtcggactttccttt 10543566  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 52468115 - 52468175
Alignment:
Q  204 ttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||| ||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  52468115 ttattctctttctctctgataccacgcgttccatcaccatcactccatcagactttccttt 52468175  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 39329683 - 39329622
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||| ||||||||||| ||||| ||||||| |||||||||| || |||||||||||||||    
T  39329683 cttattctctttctctctgataccacgcgttctatcatcatcactcaatcagactttccttt 39329622  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 37747002 - 37746938
Alignment:
Q  200 tttcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||||||||||||||| ||||| ||| | |||||| ||||| |||||| |||||||||||    
T  37747002 tttcttattatctttctctctgataccacgcataccatcaccatcactccatcggactttccttt 37746938  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 36118735 - 36118675
Alignment:
Q  204 ttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||| ||||||||||| ||||| ||| |||||| | ||||| |||||| |||||||||||    
T  36118735 ttattctctttctctctgataccacgctttccattaccatcactccatcggactttccttt 36118675  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 15167693 - 15167632
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||||| ||||||||| ||||| |||||||||||| ||||| || |||||||||||||||    
T  15167693 cttattatttttctctctgataccacgcgttccatcaccatcactctatcagactttccttt 15167632  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 15078583 - 15078640
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttc 260  Q
    |||||||| ||||||||| ||||| |||||||||||| ||||| || |||||||||||    
T  15078583 cttattatttttctctctgataccacgcgttccatcaccatcactctatcagactttc 15078640  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 34048986 - 34048926
Alignment:
Q  204 ttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||| ||||||||||  ||||| |||||||||||| ||||| |||||| |||||||||||    
T  34048986 ttattctctttctctccgataccacgcgttccatcaccatcactccatcggactttccttt 34048926  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 26803784 - 26803844
Alignment:
Q  204 ttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||| ||||||||||| |||||||| ||||||||| ||||| ||||||||||||| ||||    
T  26803784 ttattctctttctctctaataccgcgtgttccatcaccatcactccatcagacttttcttt 26803844  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 10926223 - 10926162
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||| |||||||||||  ||||  ||||||||||| ||||| ||||||||||||||||||    
T  10926223 cttattctctttctctctggtaccatgcgttccatcaccatcactccatcagactttccttt 10926162  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 39134995 - 39134941
Alignment:
Q  210 tctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||||| |||||  ||||||||||| ||||| ||||||||| ||||||||    
T  39134995 tctttctctctgataccatgcgttccatcaccatcactccatcagattttccttt 39134941  T

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Target: scaffold1320 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 1179 - 1236
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttc 260  Q
    |||||||| ||||||||| ||||| |||||||||||| ||||| || |||||||||||    
T  1179 cttattatttttctctctgataccacgcgttccatcaccatcactctatcagactttc 1236  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 231137 - 231078
Alignment:
Q  205 tattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||| ||||||||||| |||||  | ||||||||| ||||| ||||||||||||||||||    
T  231137 tattctctttctctctgataccatgtgttccatcaacatcactccatcagactttccttt 231078  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 173790 - 173729
Alignment:
Q  202 tcttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||| ||||| ||||| ||||| |||| | ||||| ||||||||||||||||||||||||    
T  173790 tcttattctctttttctct-ataccacgcgcttcatcaccatcattccatcagactttccttt 173729  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 42453253 - 42453299
Alignment:
Q  218 tctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    ||||||||| |||||||||||| ||||| || |||||||||||||||    
T  42453253 tctcataccacgcgttccatcaccatcactctatcagactttccttt 42453299  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 26279366 - 26279427
Alignment:
Q  203 cttattatctttctctctcataccgcgcgttccatcatcatcattccatcagactttccttt 264  Q
    |||||| ||||||||||| ||||| | |||||||||| ||||| |||| || ||||||||||    
T  26279366 cttattctctttctctctgataccacacgttccatcaccatcactccaacaaactttccttt 26279427  T

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