View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_low_14 (Length: 267)
Name: NF21224_low_14
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 28128138 - 28128404
Alignment:
| Q |
1 |
tataatctcagctagagacctcacgggagaataagtgagctcctgtagatatttgttaatggacaacttcaattctggaagaaaggttatcatttcacca |
100 |
Q |
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| T |
28128138 |
tataatctcagctagagacctcacgggagaataagtgagctcctgtagatatttgttaatggacaacttgaattctggaagaaaggttatcatttcacca |
28128237 |
T |
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| Q |
101 |
ttttgaaaagggtctagaatgatgcttaaattttctacttccaaattttccacaacttttgcacctctttctcttcaatttgtaaataaaacaaaagcaa |
200 |
Q |
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| T |
28128238 |
ttttgaaaagggtctagaatgatacttaaattttctacttccaaattttccacaacttttgcacctctttctcttcaatttgcaaataaaacaaaagcaa |
28128337 |
T |
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| Q |
201 |
tctcagtactgttactataaaatttgacannnnnnncatttcatcgtctatagtgtaaataaatagt |
267 |
Q |
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| T |
28128338 |
tctcagtactgttactataaaatttgacattcttttcatttcattgtctatagtgtaaataaatagt |
28128404 |
T |
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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 28109639 - 28109831
Alignment:
| Q |
1 |
tataatctcagctagagacctcacgggagaataagtgagctcctgtagatatttgttaatggacaacttcaattctggaagaaaggttatcatttcacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||| |||||| ||| |||||| |||||||||| |
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| T |
28109639 |
tataatctcagctagagacctcacgggagaataaatgagctcctgcagaaatttgttgatggacaacttgaattctaaaagtaaggttgccatttcacca |
28109738 |
T |
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| Q |
101 |
ttttgaaaagggtctagaatgatgcttaaattttctacttccaaattttccacaacttttgcacctctttctcttcaatttgtaaataaaaca |
193 |
Q |
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| T |
28109739 |
ctttgagaagggtccataaggatgcttaaattttccacttccaaattgtccaccactgttgcacctctttgtcttgaatttgcaaataaaaca |
28109831 |
T |
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