View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_low_17 (Length: 235)
Name: NF21224_low_17
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 28127924 - 28128145
Alignment:
| Q |
14 |
cttttcatatgctttccaaatgatacaaagcatttatgtcatattagtatcttatgcataatgcataatagagatagtttagataaaatttgaaaacata |
113 |
Q |
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| T |
28127924 |
cttttcatatgctttccaaatgatacaaagcatttatgtcatattagtatcttatgcataatgcataatagagatagtttagataaaatttgaaaacata |
28128023 |
T |
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| Q |
114 |
aatgataatattcaaaattataatttccatgaggtttctccagctatttgaccatttaaaattaaaagtaaatgcatggatacttactaatttagggtta |
213 |
Q |
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| T |
28128024 |
aatgataatattcaaaattataatttccatgaggtttctccagctatttgaccatttaaaattaaaagtaaatgcatagatacttactaatttagggtta |
28128123 |
T |
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| Q |
214 |
ttgatgttgaattctataatct |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
28128124 |
ttgatgttgaattctataatct |
28128145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 28109604 - 28109646
Alignment:
| Q |
193 |
atacttactaatttagggttattgatgttgaattctataatct |
235 |
Q |
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| T |
28109604 |
atacttactaaattagggttgttgatgttaaattctataatct |
28109646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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