View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_low_20 (Length: 208)
Name: NF21224_low_20
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 18189282 - 18189107
Alignment:
| Q |
16 |
aatattactactactgcagagtagttaagaactgaagaagcaatagcaatggcactatcctgatatttattctnnnnnnnnnccattggatttcagtcca |
115 |
Q |
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| T |
18189282 |
aatattactactactgcagagtagttaagaactgaagaagcaatagcaatgacactatcctgatatttattctaaaaaaaaac-attggatttcagtcca |
18189184 |
T |
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| Q |
116 |
aaaatctcctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
192 |
Q |
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| T |
18189183 |
aaaatctcctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
18189107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 18194500 - 18194336
Alignment:
| Q |
24 |
tactactgcagagtagtta-agaactgaagaagcaatagcaatggcactatcctgatatttattctnnnnnnnnnccattggatttcagtccaaaaatct |
122 |
Q |
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| T |
18194500 |
tactactacagagtagatatagaactgatgaagcaatagcaatagcattctcctgatatttattctaaaacaaat-cattggatttcagtcaaaaaatct |
18194402 |
T |
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| Q |
123 |
cctttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
192 |
Q |
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| T |
18194401 |
cctttcctttgt-tatttatcgtgtgat---tcgtgtctcatttacagaatatgtacaacaaagatattt |
18194336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 18199007 - 18198942
Alignment:
| Q |
125 |
tttcctttgtctattcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
192 |
Q |
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| T |
18199007 |
tttcctttgtcttttc--cttgttatttatcctgtctcatttacataatatgtgcatcaaagatattt |
18198942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 18231811 - 18231714
Alignment:
| Q |
98 |
ccattggatttcagtccaaaaatctcctttcctttgtct---attcatcttgttatttatcctgtctcatttacataatatgtacaacaaagatattt |
192 |
Q |
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| T |
18231811 |
ccattggatattagttcaaaaatctcatttccttggtcttcaattcaccttgttatttatcctatctcatataaaaaatatgcacatcaaagatattt |
18231714 |
T |
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