View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21224_low_4 (Length: 422)
Name: NF21224_low_4
Description: NF21224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21224_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 24 - 409
Target Start/End: Original strand, 437621 - 438009
Alignment:
| Q |
24 |
tcttctatggatccttgctcattcgtacggatcctaatcggaaaccttgcaattaaatcaccatcatcatcaaaaccatcattctccggcaaagttcatc |
123 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437621 |
tcttctatggatccgtgctcattcttacggatcctaatcggaaaccttgcaattaaatcaccatcatcatcaaaaccatcattctccggcaaagttcatc |
437720 |
T |
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| Q |
124 |
cttcaagctccacatgctactgcgaaatcaaactcaaaggcgttgattctcc---accttgccacgttgcaacagttcctctaatatctgaatcagaaac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
437721 |
cttcaagctccacatgctactgcgaaatcaaactcaaaggcgttgattctcctccacctttccacgttgcaacagttcctctaatatctgaatcagaaac |
437820 |
T |
|
| Q |
221 |
acaccctcactctctcgctgctacctttgatttcccaaaatcacaaatctctaactttaaaaaccctctcatcaaaatctccgttttcaaaactaacaca |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
437821 |
acaccctcactctctcgctgctacctttgatttcccaaaatcacaaatctctaactttaaaaaccctctcatcaaaatctccgttttcaaaacgaacaca |
437920 |
T |
|
| Q |
321 |
aacccttcatgcgttttcaacactgcaaaactcgtaggtcaaatttcaataccccttgatctaacgttagttgaatcacgaccttgttc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437921 |
aacccttcatgcgttttcaacactgcaaaactcgtaggtcaaatttcaataccccttgatctaacgttagttgaatcacgaccttgttc |
438009 |
T |
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